d3752edc12da1bf08427946150f564dbdd5d2254 angie Thu Oct 24 13:55:51 2019 -0700 bigDbSnp track handler code - initial commit. refs #23283 * dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS). * bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint. * trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*. diff --git src/hg/lib/trackHub.c src/hg/lib/trackHub.c index a417636..ad6ebeb 100644 --- src/hg/lib/trackHub.c +++ src/hg/lib/trackHub.c @@ -833,30 +833,31 @@ #ifdef USE_HAL startsWithWord("pslSnake", type) || startsWithWord("halSnake", type) || #endif startsWithWord("vcfTabix", type) || startsWithWord("bigPsl", type) || startsWithWord("bigMaf", type) || startsWithWord("longTabix", type) || startsWithWord("bigGenePred", type) || startsWithWord("bigNarrowPeak", type) || startsWithWord("bigChain", type) || startsWithWord("bigLolly", type) || startsWithWord("bigBarChart", type) || startsWithWord("bigInteract", type) || startsWithWord("hic", type) || + startsWithWord("bigDbSnp", type) || startsWithWord("bam", type))) { errAbort("Unsupported type '%s' in hub %s genome %s track %s", type, hub->url, genome->name, tdb->track); } requiredSetting(hub, genome, tdb, "bigDataUrl"); } } if (sameString("barChart", type) || sameString("bigBarChart", type)) requireBarChartBars(hub, genome, tdb); } } }