435fbceebeaddec93ebca4eaa50b20123967a285
angie
  Fri Oct 25 11:40:25 2019 -0700
LRG: if source URL is missing a protocol, prepend http:// .  Thx Jairo.  refs #24285

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 275887a..c69f2a7 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -28710,31 +28710,31 @@
     string hgvsCod;         "coding HGVS"
     string hgvsProt;         "protein HGVS"
     string lastEval;         "last evaluation"
     string guidelines;         "guidelines"
     lstring otherIds;         "other identifiers (OMIM)"
     )
 '_EOF_'
 
 bedToBigBed clinvarMain.bed /scratch/data/hg19/chrom.sizes clinvarMain.bb -type=bed4+18 -tab -as=clinvar.as
 bedToBigBed clinvarCnv.bed /scratch/data/hg19/chrom.sizes clinvarCnv.bb -type=bed4+18 -tab -as=clinvar.as
 cp clinvarMain.bb /hive/data/genomes/hg19/bed/clinvar/
 cp clinvarCnv.bb /hive/data/genomes/hg19/bed/clinvar/
 
 _EOF_
 #########################################################################
-# LOCUS REFERENCE GENOMIC (LRG) REGIONS AND TRANSCRIPTS (DONE 10/10/19 angie)
+# LOCUS REFERENCE GENOMIC (LRG) REGIONS AND TRANSCRIPTS (DONE 10/25/19 angie)
 # Redmine #13359, #24285 -- otto-mate To Do #17877
 # previously done 7/7/14, 9/9/16, 5/30/18
     screen -S lrg -t lrg
     set today = `date +%Y_%m_%d`
     mkdir -p /hive/data/genomes/hg19/bed/lrg/$today
     cd /hive/data/genomes/hg19/bed/lrg/$today
     wget ftp://ftp.ebi.ac.uk/pub/databases/lrgex/LRG_public_xml_files.zip
     unzip LRG_public_xml_files.zip
     # The .atree file was useful for getting a handle on the hierarchy and types of nodes:
     # autoDtd LRG_1.xml lrg.dtd lrg.stats -atree=lrg.atree
 
     # Run script to convert LRG*.xml files to BED+ for regions and genePredExt+fa for transcripts:
     ~/kent/src/hg/utils/automation/parseLrgXml.pl GRCh37
     genePredCheck lrgTranscriptsUnmapped.gp
 #Error: lrgTranscriptsUnmapped.gp:765: LRG_7t1 no exonFrame on CDS exon 46