895644af226dd57285d4b0469da87dc34df76e5e angie Thu Oct 24 13:55:25 2019 -0700 trackDb and descriptions for new tracks dbSnp152* and dbSnp153*. tagTypes changes for bigDbSnp type (and subsequent big* types). refs #23283 diff --git src/hg/makeDb/trackDb/human/dbSnp152.html src/hg/makeDb/trackDb/human/dbSnp152.html new file mode 100644 index 0000000..b0d5445 --- /dev/null +++ src/hg/makeDb/trackDb/human/dbSnp152.html @@ -0,0 +1,23 @@ +

Description

+

+This track shows hundreds of millions of short genetic variants +(up to approximately 50 base pairs) from +dbSNP +build 152: +single-nucleotide variants (SNVs), +small insertions, deletions, and complex deletion/insertions, +relative to the reference genome assembly. +Most variants in dbSNP are rare, not true polymorphisms, +and some variants are known to be pathogenic. +

+For hg38 (GRCh38), approximately 655 million distinct variants +(RefSNP clusters with rs# ids) +have been mapped to almost 690 million genomic locations +including alternate haplotype and fix patch sequences. +dbSNP remapped variants from hg38 to hg19 (GRCh37); +approximately 645 million distinct variants were mapped to +over 670 million genomic locations +including alternate haplotype and fix patch sequences (not +all of which are included in UCSC's hg19). +

+