d3752edc12da1bf08427946150f564dbdd5d2254
angie
  Thu Oct 24 13:55:51 2019 -0700
bigDbSnp track handler code - initial commit.  refs #23283
* dnautil: Added trimRefAltLeft to get left-justified trimming (a la VCF not HGVS).
* bigBedClick: do hReplaceGbdb up front in parseDetailsTablUrls instead of waiting until endpoint.
* trackDbCustom.c: consolidating type-handling for wig/bigWig vs. bigBed-based big*.

diff --git src/hg/hgc/makefile src/hg/hgc/makefile
index 2b6f52d..3b99c16 100644
--- src/hg/hgc/makefile
+++ src/hg/hgc/makefile
@@ -1,42 +1,43 @@
 kentSrc = ../..
 include ../../inc/common.mk
 
 L += -lm ${MYSQLLIBS} 
 MYLIBDIR = ../../lib/${MACHTYPE}
 MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkweb.a
 
 A = hgc
 
-O = $A.o bamClick.o barChartClick.o bigBedClick.o dbRIP.o ccdsClick.o cgapSageClick.o \
+O = $A.o bamClick.o barChartClick.o bigBedClick.o bigDbSnpClick.o \
+	ccdsClick.o cgapSageClick.o dbRIP.o \
 	encodeClick.o expClick.o \
 	gencodeClick.o gtexEqtlClusterClick.o gtexClick.o gvfClick.o hgdpClick.o \
 	interactClick.o lowelab.o lrgClick.o \
 	mafClick.o makeItemsClick.o mgcClick.o \
 	parClick.o peakClusters.o regMotif.o retroClick.o rmskJoinedClick.o \
 	rnaFoldClick.o \
 	transMapClick.o txCdsInfo.o pubs.o vcfClick.o virusClick.o wiggleClick.o \
 	wikiTrack.o variomeClick.o numtsClick.o geneReviewsClick.o
 
 include ../../inc/cgi_build_rules.mk
 
 mgsc: compile
 	mv $A ${CGI_BIN}-mgsc/$A
 
 compile: $O 
 	${CC} ${CFLAGS} $O ${F64} ${MYLIBS} ${L}
 	mv ${AOUT} $A${EXE}
 
 my::
 	rm -rf ${CGI_BIN}-${USER}/hgcData ${CGI_BIN}-${USER}/lsSnpPdbChimera.py
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgcData ../lib/lsSnpPdbChimera.py ${CGI_BIN}-${USER}/
 	chmod -R a+rX ${CGI_BIN}-${USER}/hgcData ${CGI_BIN}-${USER}/lsSnpPdbChimera.py
 
 alpha::
 	rm -fr ${CGI_BIN}/hgcData ${CGI_BIN}/lsSnpPdbChimera.py
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgcData ../lib/lsSnpPdbChimera.py ${CGI_BIN}/
 	chmod -R a+rX,g+w ${CGI_BIN}/hgcData ${CGI_BIN}/lsSnpPdbChimera.py
 
 beta::
 	rm -fr ${CGI_BIN}-beta/hgcData ${CGI_BIN}-beta/lsSnpPdbChimera.py
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgcData ../lib/lsSnpPdbChimera.py ${CGI_BIN}-beta/
 	chmod -R a+rX,g+w ${CGI_BIN}-beta/hgcData ${CGI_BIN}-beta/lsSnpPdbChimera.py