c1af5058b92082ad2a796371e9732e92ca205066 brianlee Mon Oct 21 15:33:48 2019 -0700 Adding session links requested in Code Review input diff --git src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html index 7b7650f..330e535 100755 --- src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html +++ src/hg/htdocs/goldenPath/help/hgWiggleTrackHelp.html @@ -32,31 +32,36 @@ option displays the data using the parameters specified in the Vertical viewing range setting. To configure the graph to automatically scale to a range defined by the minimum and maximum data points in the current view, select the "Auto-scale to data view" option. To keep the y=0 value in view at all times when Auto-scale is selected, set "Always include zero" to "ON".</p> <ul> <li>When viewing signal tracks within a composite group use "group auto-scale" to enable having all tracks scaled against the one track in the group that has the highest maximum data points in the current view. For example, below is a side-by-side image of two views of the same data from a selection of cell lines within a composite of related RNA-seq experiments. On the left is the original "auto-scale to data view" setting, where each track is auto-scaled to appear at each track's highest value. And on the right is the new "group auto-scale" setting for the same RNA-seq data where all tracks are scaled against the one track in the region that has the highest value (67215 for IMR9 cell TAP + 1).<br> - <img src="../../images/groupAutoScale.png" width='600' alt="Auto-scale comparison"></li> + <img src="../../images/groupAutoScale.png" width='600' alt="Auto-scale comparison"><br> + Click this <a href="/cgi-bin/hgTracks?hgS_doLoadUrl=submit&hgS_loadUrlName=http://genome.ucsc.edu/goldenPath/help/examples/sessions/session.autoScale" + target="_blank">link</a> to interact with the original "auto-scale to data view" on + the left, and to contrast the results with the new "group auto-scale" click this + <a href="/cgi-bin/hgTracks?hgS_doLoadUrl=submit&hgS_loadUrlName=http://genome.ucsc.edu/goldenPath/help/examples/sessions/session.groupAutoScale" + target="_blank">link</a>.</li> </ul> <p> <strong>Vertical viewing range (boxed in red)</strong>: The min and max values specify the vertical portion of the graph that is displayed (default range is 30-70). These numbers can be used to set data threshold indicators. For example, to display only those GC values greater than 50 percent, set the min value to "50".</p> <p> <strong>Transform function</strong>: Transforms the data points by the function selected in the drop-down menu. Usually the default setting is "None".</p> <p> <strong>Windowing function</strong>: When a view is too large to show individual data values, the values must be combined to produce a plot point. This option specifies the combining function to be used (default is "Mean"):</p> <ul> <li>