9b91a6fbcf3a07ebc877ff9fa7a8d2f59598ab00 dschmelt Thu Oct 24 16:19:36 2019 -0700 Changing verb and capitalization for CR #24347 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 73fd0d5..9f1e3bf 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,62 +40,64 @@ <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> <a name="102419"></a> -<h2>Oct. 24, 2019 Hi-C heatmap visualizations; Platinum VCFs</h2> -<h3>New Hi-C heatmap tracks and Visualization Type</h3> +<h2>Oct. 24, 2019 New Hi-C heatmap tracks and Visualization Type</h2> <p> We are pleased to announce a new heatmap visualization type to the UCSC Genome Browser. -These customizable heatmaps support Hi-C and other interaction based sequencing methods. +These customizable heatmaps support Chromosome Conformation Capture (3C), Hi-C, and other +high-density interaction based sequencing methods. This is the next evolution of our support for +3C sequencing data, following the popular <a href=#081018>Interact format used in GeneHancer</a>. They can be configured as square, triangular, or arc interactions. You can see examples of Hi-C regulation tracks on hg19 or hg38 assemblies.</p> <ul> <li> <a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&rao2014Hic=full" target="_blank">Hi-C Heatmap Track on hg19</a></li> <li> <a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&hicAndMicroC=full" target="_blank">Hi-C Heatmap Track on hg38</a></li></ul> <p> This track type is available for use with user data as a Custom Track or Track Hub, with the <code>type=hic</code> specification. This visualization is suitable for publications to show DNA-DNA interactions which may indicate TADs and loop enhancer-promoter interations. </p> <p class="text-center"> <img class='text-center' src="../images/hicExample.png" width='600' alt="Example of a Hi-C Track"> </p> -<h3>New Platinum Genomes VCF Track</h3> +<a name="102419b"></a> +<h2>Oct. 24, 2019 New Platinum Genomes VCF Track</h2> <p> We are further pleased to announce the new Platinum Genomes VCF Tracks. These variant tracks offer deeply seqeuenced and validated VCFs on both hg19 and hg38. This data was derived from consensus analysis of a 17-member family pedigree to reduce potential error. You can view the tracks below:</p> <ul> <li> <a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&platinumGenomes=pack" target="_blank">Platinum Genomes Track on hg19</a></li> <li> -<a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&platinumGenomes=pack" target="_blank">Platinum Track on hg38</a></li></ul> +<a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&platinumGenomes=pack" target="_blank">Platinum Genomes Track on hg38</a></li></ul> <a name="101619"></a> <h2>Oct. 16, 2019 New GENCODE Genes tracks for human (V32) and mouse (VM23)</h2> <p> We are pleased to announce the release of updated GENCODE Genes annotation tracks for both the <a href="../cgi-bin/hgTracks?db=hg38&g=knownGene" target="_blank">hg38/GRCh38</a> and <a href="../cgi-bin/hgTracks?db=mm10&g=knownGene" target="_blank">mm10/GRCm38</a> assemblies corresponding to the <a href="http://www.ensembl.info/2019/09/26/ensembl-98-has-been-released/" target="_blank"> Ensembl 98</a> release.</p> <p> The following table provides statistics for the <a href="../cgi-bin/hgTrackUi?db=hg38&g=knownGene" target="_blank">human V32</a> and