db0069c4d3afe0e0834345b4665f62995cee8115
dschmelt
  Thu Oct 24 14:46:54 2019 -0700
Adding newsArch for Hic/Plat tracks #24273

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@@ -39,30 +39,65 @@
     </div>
     <div class="col-sm-3">
       <ul>
         <li><a href="#2004">2004 News</a></li>
         <li><a href="#2003">2003 News</a></li>
         <li><a href="#2002">2002 News</a></li>
         <li><a href="#2001">2001 News</a></li>
       </ul>
     </div>
   </div>
 </div>
 
 <!-- ============= 2019 archived news ============= -->
 <a name="2019"></a>
 
+<a name="102419"></a>
+<h2>Oct. 24, 2019 &nbsp;&nbsp; Hi-C heatmap visualizations; Platinum VCFs</h2>
+<h3>New Hi-C heatmap tracks and Visualization Type</h3>
+<p>
+We are pleased to announce a new heatmap visualization type to the UCSC Genome Browser. 
+These customizable heatmaps support Hi-C and other interaction based sequencing methods.
+They can be configured as square, triangular, or arc interactions. You can see examples of Hi-C
+regulation tracks on hg19 or hg38 assemblies.</p>
+<ul>
+<li>
+<a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&rao2014Hic=full" target="_blank">Hi-C Heatmap Track on hg19</a></li>
+<li>
+<a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&hicAndMicroC=full" target="_blank">Hi-C Heatmap Track on hg38</a></li></ul>
+<p>
+This track type is available for use with user data as a Custom Track or Track Hub, with the
+<code>type=hic</code> specification. This visualization is suitable for publications to show 
+DNA-DNA interactions which may indicate TADs and loop enhancer-promoter interations.
+</p>
+<p class="text-center">
+  <img class='text-center' src="../images/hicExample.png" width='600' alt="Example of a Hi-C Track">
+</p>
+
+<h3>New Platinum Genomes VCF Track</h3>
+<p>
+We are further pleased to announce the new Platinum Genomes VCF Tracks. These variant tracks 
+offer deeply seqeuenced and validated VCFs on both hg19 and hg38. This data was derived from
+consensus analysis of a 17-member family pedigree to reduce potential error.
+You can view the tracks below:</p>
+<ul>
+<li>
+<a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&platinumGenomes=pack" target="_blank">Platinum Genomes Track on hg19</a></li>
+<li>
+<a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&platinumGenomes=pack" target="_blank">Platinum Track on hg38</a></li></ul> 
+
+
 <a name="101619"></a>
 <h2>Oct. 16, 2019 &nbsp;&nbsp; New GENCODE Genes tracks for human (V32) and mouse (VM23)</h2>
 <p>
 We are pleased to announce the release of updated GENCODE Genes annotation tracks for both the
 <a href="../cgi-bin/hgTracks?db=hg38&g=knownGene" target="_blank">hg38/GRCh38</a> and 
 <a href="../cgi-bin/hgTracks?db=mm10&g=knownGene" target="_blank">mm10/GRCm38</a> assemblies
 corresponding to the
 <a href="http://www.ensembl.info/2019/09/26/ensembl-98-has-been-released/" target="_blank">
 Ensembl 98</a> release.</p>
 
 <p>
 The following table provides statistics for the 
 <a href="../cgi-bin/hgTrackUi?db=hg38&g=knownGene" target="_blank">human V32</a> and 
 <a href="../cgi-bin/hgTrackUi?db=mm10&g=knownGene" target="_blank">mouse VM23</a> releases derived
 from the GTF files that contain annotations only on the main chromosomes. More information on how