9cf69817d6de08056df3fddfb083b44744d1582d jnavarr5 Fri Oct 25 12:58:23 2019 -0700 Announcing the Illumina GDA track for hg19, refs #24320 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 9f1e3bf..816eb17 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -38,30 +38,49 @@ </ul> </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="102519"></a> +<h2>Oct. 25, 2019 New Illumina Global Diversity Array for human (GRChg37/hg19)</h2> +<p> +We are pleased to announce the release of the +<a href="../cgi-bin/hgTrackUi?db=hg19&c=chrX&g=genotypeArrays" target="_blank">Illumina Global +Diversity Array</a> (GDA) for human (GRChg37/hg19). This track is included in the SNP/CNV composite +track under the Variation group.</p> +<p> +The +<a href="https://www.illumina.com/products/by-type/microarray-kits/infinium-global-diversity.html" +target="_blank">Global Diversity Array-8</a> v1.0 BeadChip includes coverage of the ACMG 59-gene +clinical research variants and multi-ethnic, genome-wide content. The GDA is the commercial version +of the array chosen by the <a href="https://allofus.nih.gov/" target="_blank">All of Us</a> Research +Program and is designed to capture a wider range of the world's populationsthan traditional +microarrays.</p> +<p> +We would like to thank Jay Kaufman and John Picuri at Illumina for providing the data. We would also +like to thank Brian Raney and Jairo Navarro at UCSC for creating and reviewing the tracks for hg19. +</p> <a name="102419"></a> <h2>Oct. 24, 2019 New Hi-C heatmap tracks and Visualization Type</h2> <p> We are pleased to announce a new heatmap visualization type to the UCSC Genome Browser. These customizable heatmaps support Chromosome Conformation Capture (3C), Hi-C, and other high-density interaction based sequencing methods. This is the next evolution of our support for 3C sequencing data, following the popular <a href=#081018>Interact format used in GeneHancer</a>. They can be configured as square, triangular, or arc interactions. You can see examples of Hi-C regulation tracks on hg19 or hg38 assemblies.</p> <ul> <li> <a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&rao2014Hic=full" target="_blank">Hi-C Heatmap Track on hg19</a></li> <li> <a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&hicAndMicroC=full" target="_blank">Hi-C Heatmap Track on hg38</a></li></ul>