726a4c9c82592c662ae6b8c715e67b783c95beb3 angie Mon Nov 18 13:45:42 2019 -0800 Instead of dropping rs IDs that have incomplete frequency data, add two new ucscNotes: freqIncomplete and freqNotMapped. refs #23283 diff --git src/hg/inc/bigDbSnp.h src/hg/inc/bigDbSnp.h index 6fb3d21..88dd2da 100644 --- src/hg/inc/bigDbSnp.h +++ src/hg/inc/bigDbSnp.h @@ -80,31 +80,33 @@ /* -------------------------------- End autoSql Generated Code -------------------------------- */ // ucscNotes is a comma-separated list of these values. Developer: if you add a new one here, // then also update the descriptions used by bigDbSnpDescribeUcscNote in bigDbSnp.c. #define bdsAltIsAmbiguous "altIsAmbiguous" #define bdsClassMismatch "classMismatch" #define bdsClinvar "clinvar" #define bdsClinvarBenign "clinvarBenign" #define bdsClinvarConflicting "clinvarConflicting" #define bdsClinvarPathogenic "clinvarPathogenic" #define bdsClusterError "clusterError" #define bdsCommonAll "commonAll" #define bdsCommonSome "commonSome" #define bdsDiffMajor "diffMajor" +#define bdsFreqIncomplete "freqIncomplete" #define bdsFreqIsAmbiguous "freqIsAmbiguous" +#define bdsFreqNotMapped "freqNotMapped" #define bdsFreqNotRefAlt "freqNotRefAlt" #define bdsMultiMap "multiMap" #define bdsOtherMapErr "otherMapErr" #define bdsOverlapDiffClass "overlapDiffClass" #define bdsOverlapSameClass "overlapSameClass" #define bdsRareAll "rareAll" #define bdsRareSome "rareSome" #define bdsRefIsAmbiguous "refIsAmbiguous" #define bdsRefIsMinor "refIsMinor" #define bdsRefIsRare "refIsRare" #define bdsRefIsSingleton "refIsSingleton" #define bdsRefMismatch "refMismatch" #define bdsRevStrand "revStrand" char *bigDbSnpDescribeUcscNote(char *ucscNote);