c0401cde5d3035571adf6898d572a60f756d0af2 angie Mon Nov 18 15:36:10 2019 -0800 dbSnp153: Use new FilterLabel setting to replace the long definition of numeric maxFuncImpact column with a label that is more congruent with dropdown choices. refs #23283 diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra index 2a2af37..6daab29 100644 --- src/hg/makeDb/trackDb/human/trackDb.ra +++ src/hg/makeDb/trackDb/human/trackDb.ra @@ -1656,30 +1656,31 @@ freqNotRefAlt|Reference genome allele is not major allele in at least one project,\ multiMap|Variant is placed in more than one genomic position,\ otherMapErr|Another mapping of this variant has illegal coords (indel mapping error?),\ overlapDiffClass|Variant overlaps other variant(s) of different type/class,\ overlapSameClass|Variant overlaps other variant(s) of same type/class but different position,\ rareAll|MAF < 1% in all projects that report frequencies (or no frequency data),\ rareSome|MAF < 1% in at least one project that reports frequencies,\ refIsAmbiguous|Reference genome allele contains IUPAC ambiguous base(s),\ refIsMinor|Reference genome allele is minor allele in at least one project that reports frequencies,\ refIsRare|Reference genome allele frequency is <1% in at least one project,\ refIsSingleton|Reference genome frequency is 0 in all projects that report frequencies,\ refMismatch|Reference allele mismatches reference genome sequence,\ revStrand|Variant maps to opposite strand relative to dbSNP's preferred top-level placement #' ucscNotesFilterType multipleListOr + maxFuncImpactFilterLabel Greatest functional impact on gene maxFuncImpactFilterValues 0|(not annotated),\ 0865|frameshift,\ 1587|stop_gained,\ 1574|splice_acceptor_variant,\ 1575|splice_donor_variant,\ 1821|inframe_insertion,\ 1583|missense_variant,\ 1590|terminator_codon_variant,\ 1819|synonymous_variant,\ 1580|coding_sequence_variant,\ 1623|5_prime_UTR_variant,\ 1624|3_prime_UTR_variant,\ 1619|nc_transcript_variant,\ 2153|genic_upstream_transcript_variant,\ 1986|upstream_transcript_variant,\