bb741d3e5dfe3fcc576bbe2b84080c78d1f2bc1b dschmelt Wed Nov 20 11:43:03 2019 -0800 Removed period #24490 diff --git src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html index 19ac6f1..4462edf 100755 --- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html +++ src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html @@ -188,31 +188,31 @@ <p> This section provides a step-by-step description of the process used to set up a track hub on your own server.</p> <p> To create your own hub you will need:</p> <ul> <li> one or more data sets formatted in one of the compressed binary index formats supported by the Genome Browser: bigBed, bigBarChart, bigGenePred, bigNarrowPeak, bigPsl, bigChain, bigInteract, bigMaf, bigWig, BAM, CRAM, HAL, hic or VCF</li> <li> a set of text files that specify properties for the track hub and for each of the data tracks within it</li> <li> a twoBit file with your sequence if you are setting up an assembly hub. Note that the allowed - characters in sequence names are [A-Za-z_0-9_.-]</li> + characters in sequence names are [A-Za-z_0-9_-]</li> <li> an Internet-enabled web server or ftp server </li> <!--Question: do we have some general minimum requirements for this?--> </ul> <p> The files are placed on the server in a file hierarchy like the one shown in <em>Example 1</em>. Users experienced in setting up Genome Browser mirrors that contain their own data will find that setting up a track hub is similar, but is usually much easier. Depending on the number and complexity of the data sets, a track hub can typically be set up in a day or two. It is generally easiest to run the command-line data formatting programs in a Linux programming environment, although it's possible to manipulate smaller data sets using Mac OS-X as well.</p> <p> <b>Note:</b> there is now a <code>useOneFile on</code> hub setting that allows the hub properties to be specified in a single file. More information about this setting can be found on the <a href="./hgTracksHelp.html#UseOneFile" target="_blank">Genome Browser User Guide</a>.</p>