560b2736eecac74f65a714e84e7375ce8018730a dschmelt Fri Nov 15 16:44:42 2019 -0800 Slight change to wording to reflect that useOneFile doesn't require ordered stanzas No Rm diff --git src/hg/htdocs/goldenPath/help/hgTracksHelp.html src/hg/htdocs/goldenPath/help/hgTracksHelp.html index 0b3f5b2..30ba6a0 100755 --- src/hg/htdocs/goldenPath/help/hgTracksHelp.html +++ src/hg/htdocs/goldenPath/help/hgTracksHelp.html @@ -1395,33 +1395,32 @@ <h2>Do Track Hubs require directories for the data?</h2> <p> Historically, a hub needed a set of text files to specify properties for a track hub and each of the data tracks within the hub. The track hub settings were stored in a three file structure: hub.txt, genomes.txt, and trackDb.txt</p> <pre> myHub/ - directory containing track hub files * hub.txt - a short description of hub properties * genomes.txt - list of genome assemblies included in the hub data * hg19/ - directory of data for the hg19 (GRCh37) human assembly ** trackDb.txt - display properties for tracks in this directory </pre> <p> Now, there is a trackDb option to have your entire track hub inside of one file, <code>useOneFile on</code>. Adding the <code>useOneFile on</code> line to the hub.txt section of the -file allows the contents of all three files to be referenced inside of one file. The order of the -file contents is essential and needs to be in the following order to work: hub.txt, genomes.txt, -then trackDb.txt. +file allows the contents of all three files to be referenced inside of one file. We recommend the +single hub.txt file's contents be in the following order: hub.txt, genomes.txt, then trackDb.txt. </p> <pre> hub myExampleHub shortLabel Example Hub longLabel Example Hub for useOneFile option useOneFile on email genome-www@soe.ucsc.edu genome hg19 track vcfExample shortLabel VCF example longLabel VCF: 1000 Genomes phase 1 interim SNVs visibility pack type vcfTabix