cc1b0605a9857feae65b128e658a74642e876a41
hiram
  Tue Nov 26 13:04:18 2019 -0800
Added regenCho1 - Regeneron CHO refs #24568

diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf
index 5c89a22..23877e1 100644
--- src/hg/makeDb/genbank/etc/genbank.conf
+++ src/hg/makeDb/genbank/etc/genbank.conf
@@ -345,30 +345,48 @@
 CHM1.serverGenome = /hive/data/genomes/CHM1/CHM1.2bit
 CHM1.ooc = /hive/data/genomes/CHM1/11.ooc
 CHM1.lift = /hive/data/genomes/CHM1/jkStuff/CHM1.unBridged.lift
 CHM1.refseq.mrna.native.pslCDnaFilter = -minId=0.95 -minCover=0.25 -localNearBest=0.010 ${common.refseq.mrna.native.pslCDnaFilter}
 CHM1.genbank.mrna.native.pslCDnaFilter = ${finished.genbank.mrna.native.pslCDnaFilter}
 CHM1.genbank.est.native.pslCDnaFilter = ${finished.genbank.est.native.pslCDnaFilter}
 CHM1.genbank.mrna.native.load  = yes
 CHM1.genbank.mrna.xeno.load  = no
 CHM1.genbank.est.native.load = yes
 CHM1.genbank.est.xeno.load = no
 CHM1.refseq.mrna.native.load  = yes
 CHM1.refseq.mrna.xeno.load  = no
 CHM1.downloadDir = CHM1
 CHM1.perChromTables = no
 
+# regenCho1 (Cricetulus griseus - Chinese hamster ovary cell line CHO-K1)
+regenCho1.serverGenome = /hive/data/genomes/regenCho1/regenCho1.2bit
+regenCho1.ooc = /hive/data/genomes/regenCho1/jkStuff/regenCho1.11.ooc
+regenCho1.lift = /hive/data/genomes/regenCho1/jkStuff/nonBridged.lift
+regenCho1.downloadDir = regenCho1
+regenCho1.perChromTables = no
+regenCho1.refseq.mrna.native.pslCDnaFilter  = ${ordered.refseq.mrna.native.pslCDnaFilter}
+regenCho1.refseq.mrna.xeno.pslCDnaFilter    = ${ordered.refseq.mrna.xeno.pslCDnaFilter}
+regenCho1.genbank.mrna.native.pslCDnaFilter = ${ordered.genbank.mrna.native.pslCDnaFilter}
+regenCho1.genbank.mrna.xeno.pslCDnaFilter   = ${ordered.genbank.mrna.xeno.pslCDnaFilter}
+regenCho1.genbank.est.native.pslCDnaFilter  = ${ordered.genbank.est.native.pslCDnaFilter}
+# DO NOT NEED genbank.mrna.xeno except for human, mouse
+# defaults yes: genbank.mrna.native.load, genbank.mrna.native.loadDesc,
+# genbank.est.native.load, refseq.mrna.native.load, refseq.mrna.native.loadDesc,
+# refseq.mrna.xeno.load , refseq.mrna.xeno.loadDesc
+# regenCho1.upstreamGeneTbl = ensGene
+# regenCho1.upstreamMaf = multiz9way /hive/data/genomes/regenCho1/bed/multiz9way/species.list
+
 # criGriChoV2 (Cricetulus griseus - Chinese hamster ovary cell line CHO-K1)
 criGriChoV2.serverGenome = /hive/data/genomes/criGriChoV2/criGriChoV2.2bit
 criGriChoV2.ooc = /hive/data/genomes/criGriChoV2/jkStuff/criGriChoV2.11.ooc
 criGriChoV2.lift = no
 criGriChoV2.downloadDir = criGriChoV2
 criGriChoV2.perChromTables = no
 criGriChoV2.refseq.mrna.native.pslCDnaFilter  = ${ordered.refseq.mrna.native.pslCDnaFilter}
 criGriChoV2.refseq.mrna.xeno.pslCDnaFilter    = ${ordered.refseq.mrna.xeno.pslCDnaFilter}
 criGriChoV2.genbank.mrna.native.pslCDnaFilter = ${ordered.genbank.mrna.native.pslCDnaFilter}
 criGriChoV2.genbank.mrna.xeno.pslCDnaFilter   = ${ordered.genbank.mrna.xeno.pslCDnaFilter}
 criGriChoV2.genbank.est.native.pslCDnaFilter  = ${ordered.genbank.est.native.pslCDnaFilter}
 # DO NOT NEED genbank.mrna.xeno except for human, mouse
 # defaults yes: genbank.mrna.native.load, genbank.mrna.native.loadDesc,
 # genbank.est.native.load, refseq.mrna.native.load, refseq.mrna.native.loadDesc,
 # refseq.mrna.xeno.load , refseq.mrna.xeno.loadDesc