7ad022adbcd9514fad51c749ec15feb362287b26
hiram
  Mon Nov 25 10:15:20 2019 -0800
adding gorGor6 chain/net definitions refs #24524

diff --git src/hg/makeDb/trackDb/human/chainNetPrimate.ra src/hg/makeDb/trackDb/human/chainNetPrimate.ra
index 5e55302..01aed70 100644
--- src/hg/makeDb/trackDb/human/chainNetPrimate.ra
+++ src/hg/makeDb/trackDb/human/chainNetPrimate.ra
@@ -1,21 +1,21 @@
 track primateChainNet
 compositeTrack on
 shortLabel Primate Chain/Net
 longLabel Primate Genomes, Chain and Net Alignments
 subGroup1 view Views chain=Chains net=Nets
-subGroup2 species Species s000=Human s001=Human s002=J._Craig_Venter s0025=Chimp s003=Chimp s004=Chimp s005=Chimp s006=Chimp s007=Bonobo s008=Bonobo s009=Gorilla s010=Gorilla s011=Gorilla s012=Gorilla s013a=Orangutan s013b=Orangutan s014=Gibbon s015=Gibbon s016=Proboscis_monkey s017=Black_snub-nosed_monkey s018=Golden_snub-nosed_monkey s019=Angolan_colobus s020=Crab-eating_macaque s021=Rhesus s022=Rhesus s023=Rhesus s024=Baboon s025=Baboon s026=Baboon s027=Pig-tailed_macaque s028=Sooty_mangabey s029=Green_monkey s030=Green_monkey s031=Drill s032=Squirrel_monkey s033=Ma's_night_monkey s034=Marmoset s035=Marmoset s036=White-faced_sapajou s037=Tarsier s038=Tarsier s039=Sclater's_lemur s040=Black_lemur s041=Coquerel's_sifaka s042=Mouse_lemur s043=Mouse_lemur s044=Mouse_lemur s045=Bushbaby s046=Bushbaby
+subGroup2 species Species s000=Human s001=Human s002=J._Craig_Venter s0025=Chimp s003=Chimp s004=Chimp s005=Chimp s006=Chimp s007=Bonobo s008=Bonobo s009a=Gorilla s009b=Gorilla s010=Gorilla s011=Gorilla s012=Gorilla s013a=Orangutan s013b=Orangutan s014=Gibbon s015=Gibbon s016=Proboscis_monkey s017=Black_snub-nosed_monkey s018=Golden_snub-nosed_monkey s019=Angolan_colobus s020=Crab-eating_macaque s021=Rhesus s022=Rhesus s023=Rhesus s024=Baboon s025=Baboon s026=Baboon s027=Pig-tailed_macaque s028=Sooty_mangabey s029=Green_monkey s030=Green_monkey s031=Drill s032=Squirrel_monkey s033=Ma's_night_monkey s034=Marmoset s035=Marmoset s036=White-faced_sapajou s037=Tarsier s038=Tarsier s039=Sclater's_lemur s040=Black_lemur s041=Coquerel's_sifaka s042=Mouse_lemur s043=Mouse_lemur s044=Mouse_lemur s045=Bushbaby s046=Bushbaby
 subGroup3 clade Clade c00=hominidae c01=cercopithecinae c02=haplorrhini c03=strepsirrhini
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 color 0,0,0
 altColor 255,255,0
 type bed 3
 chainLinearGap loose
 chainMinScore 5000
 dimensions dimensionX=clade dimensionY=species
 sortOrder species=+ view=+ clade=+
 configurable on
 html primateChainNet
 priority 7
@@ -95,33 +95,41 @@
         subTrack primateChainNetViewchain off
         subGroups view=chain species=s007 clade=c00
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain panPan2
         otherDb panPan2
 
         track chainPanPan1
         subTrack primateChainNetViewchain off
         subGroups view=chain species=s008 clade=c00
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain panPan1
         otherDb panPan1
 
+        track chainGorGor6
+        subTrack primateChainNetViewchain off
+        subGroups view=chain species=s009a clade=c00
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain gorGor6
+        otherDb gorGor6
+
         track chainGorGor5
         subTrack primateChainNetViewchain off
-        subGroups view=chain species=s009 clade=c00
+        subGroups view=chain species=s009b clade=c00
         shortLabel $o_Organism Chain
         longLabel $o_Organism ($o_date) Chained Alignments
         type chain gorGor5
         otherDb gorGor5
 
         track chainGorGor4
         subTrack primateChainNetViewchain off
         subGroups view=chain species=s010 clade=c00
         shortLabel $o_db Chain
         longLabel $o_db ($o_date) Chained Alignments
         type chain gorGor4
         otherDb gorGor4
 
         track chainGorGor3
         subTrack primateChainNetViewchain off
@@ -488,33 +496,41 @@
         subTrack primateChainNetViewnet off
         subGroups view=net species=s007 clade=c00
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign panPan2 chainPanPan2
         otherDb panPan2
 
         track netPanPan1
         subTrack primateChainNetViewnet off
         subGroups view=net species=s008 clade=c00
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign panPan1 chainPanPan1
         otherDb panPan1
 
+        track netGorGor6
+        subTrack primateChainNetViewnet off
+        subGroups view=net species=s009a clade=c00
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign gorGor6 chainGorGor6
+        otherDb gorGor6
+
         track netGorGor5
         subTrack primateChainNetViewnet off
-        subGroups view=net species=s009 clade=c00
+        subGroups view=net species=s009b clade=c00
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign gorGor5 chainGorGor5
         otherDb gorGor5
 
         track netGorGor4
         subTrack primateChainNetViewnet off
         subGroups view=net species=s010 clade=c00
         shortLabel $o_db Net
         longLabel $o_db ($o_date) Alignment Net
         type netAlign gorGor4 chainGorGor4
         otherDb gorGor4
 
         track netGorGor3
         subTrack primateChainNetViewnet off