60ba163cfec41900cbd7db7c31981fa7bac6e1e5
hiram
  Wed Nov 27 12:06:52 2019 -0800
adding regenCho1 chainNet refs #24568

diff --git src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
index 5307b6c..b331a51 100644
--- src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
+++ src/hg/makeDb/trackDb/trackDb.chainNet.mammal.ra
@@ -158,30 +158,81 @@
     release alpha
     shortLabel Net
     view net
     visibility dense
     parent chainNetDasNov3
 
         track netDasNov3
         release alpha
         parent chainNetDasNov3Viewnet
         subGroups view=net
         shortLabel $o_Organism Net
         longLabel $o_Organism ($o_date) Alignment Net
         type netAlign dasNov3 chainDasNov3
         html chainNet
 
+track chainNetRegenCho1
+compositeTrack on
+shortLabel $o_Organism Chain/Net
+longLabel $o_Organism ($o_date), Chain and Net Alignments
+subGroup1 view Views chain=Chain net=Net
+dragAndDrop subTracks
+visibility hide
+group compGeno
+noInherit on
+priority 370.3
+color 0,0,0
+altColor 100,50,0
+type bed 3
+sortOrder view=+
+matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
+matrixHeader A, C, G, T
+otherDb regenCho1
+chainMinScore 3000
+chainLinearGap medium
+spectrum on
+html chainNet
+
+    track chainNetRegenCho1Viewchain
+    shortLabel Chain
+    view chain
+    visibility pack
+    parent chainNetRegenCho1
+    spectrum on
+
+        track chainRegenCho1
+        parent chainNetRegenCho1Viewchain
+        subGroups view=chain
+        shortLabel $o_Organism Chain
+        longLabel $o_Organism ($o_date) Chained Alignments
+        type chain regenCho1
+        html chainNet
+
+    track chainNetRegenCho1Viewnet
+    shortLabel Net
+    view net
+    visibility full
+    parent chainNetRegenCho1
+
+        track netRegenCho1
+        parent chainNetRegenCho1Viewnet
+        subGroups view=net
+        shortLabel $o_Organism Net
+        longLabel $o_Organism ($o_date) Alignment Net
+        type netAlign regenCho1 chainRegenCho1
+        html chainNet
+
 track chainNetCriGriChoV1
 compositeTrack on
 shortLabel $o_Organism Chain/Net
 longLabel $o_Organism ($o_date), Chain and Net Alignments
 subGroup1 view Views chain=Chain net=Net
 dragAndDrop subTracks
 visibility hide
 group compGeno
 noInherit on
 priority 370.3
 color 0,0,0
 altColor 100,50,0
 type bed 3
 sortOrder view=+
 matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91