349b1915dc2dbae9181adb5b0c270254b8e5a36f jnavarr5 Mon Nov 25 13:02:01 2019 -0800 Announcing the LOVD composite track change, refs #24408. diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 8ba490d..9a99d09 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -38,30 +38,48 @@ </ul> </div> <div class="col-sm-3"> <ul> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2019 archived news ============= --> <a name="2019"></a> +<a name="112519"></a> +<h2> +Nov. 25, 2019 LOVD track split to separate long and short variants for human</h2> +<p> +We are glad to announce an update to the <a href="../../cgi-bin/hgTrackUi?db=hg19&c=chrX&g=lovdComp" +target="_blank">LOVD track</a> for human (GRCh37/hg19). The LOVD track is now a composite track +with the following two subtracks:</p> +<ul> + <li>LOVD Variants <= 100bp</li> + <li>LOVD Variants > 100bp</li> +</ul> +<p> +With this new update, the option is now available to only show the short variants and exclude +the long variants, or vice versa.</p> +<p> +We would like to than Maximillian Haussler and Jairo Navarro for creating and testing these changes. +We would also like to thank the LOVD team, Ivo Fokkema, Peter Taschner, Johan den Dunnen, and all +LOVD curators who gave permission to show their data.</p> <a name="111319"></a> <h2>Nov. 13, 2019 Hi-C Heatmaps now supported for Custom Tracks and Track Hubs</h2> <p> We are happy to announce that Hi-C heatmaps can now be used to visualize custom Hi-C data as Custom Tracks and Track Hubs. This heatmap visualization shows interaction scores for contact sequencing methods which may indicate enhancer-promoter interactions. Supporting users' Hi-C data is the next step in our support for 3C sequencing data, following the <a href="#102519b">popular Hi-C tracks</a> on <a href="../cgi-bin/hgTracks?db=hg19&hideTracks=1&knownGene=pack&rao2014Hic=full" target="_blank">hg19</a> and <a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack&hicAndMicroC=full" target="_blank">hg38</a> as well as the <a href=#081018>Interact format used in GeneHancer</a> for low-density