a5d6fcc334aadcbf49830278704ee6729bc5fd10 max Tue Nov 26 06:59:15 2019 -0800 changes after code review, refs #24511 diff --git src/utils/chromToUcsc/tests/makefile src/utils/chromToUcsc/tests/makefile index 21061f6..c20150c 100644 --- src/utils/chromToUcsc/tests/makefile +++ src/utils/chromToUcsc/tests/makefile @@ -1,14 +1,18 @@ +kentSrc = ../../.. +include ../../../inc/common.mk + + all: mkdir -p out # alas, our automated tests cannot output anything to stderr, as otherwise emails will be sent - +python2 `which chromToUcsc` -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null - +python2 `which chromToUcsc` -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null + python2 ${DESTBINDIR}/chromToUcsc -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null + python2 ${DESTBINDIR}/chromToUcsc -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null diff out/hg19.bed expected/hg19.bed diff out/mm10.bed expected/mm10.bed - +python3 `which chromToUcsc` -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null - +python3 `which chromToUcsc` -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null + python3 ${DESTBINDIR}/chromToUcsc -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null + python3 ${DESTBINDIR}/chromToUcsc -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null diff out/hg19.bed expected/hg19.bed diff out/mm10.bed expected/mm10.bed clean: rm -f out/*