356c96fb811f1c8649d7685de33011877268d062
angie
  Tue Nov 5 10:35:31 2019 -0800
dbSnp153: rebuild to get correct counts of diffMajor and refIsMinor.  refs #23283

diff --git src/hg/makeDb/trackDb/human/dbSnp153Composite.html src/hg/makeDb/trackDb/human/dbSnp153Composite.html
index c7e1cb1..592cd8e 100644
--- src/hg/makeDb/trackDb/human/dbSnp153Composite.html
+++ src/hg/makeDb/trackDb/human/dbSnp153Composite.html
@@ -214,32 +214,32 @@
     <td>commonAll</td>
     <td class="number">12178426</td>
     <td class="number">12430253</td>
     <td>Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in all
       projects reporting frequencies.</td>
   </tr>
   <tr>
     <td>commonSome</td>
     <td class="number">20534330</td>
     <td class="number">20893174</td>
     <td>Variant is "common", i.e. has a Minor Allele Frequency of at least 1% in some, but not all,
       projects reporting frequencies.</td>
   </tr>
   <tr>
     <td>diffMajor</td>
-    <td class="number">3522349</td>
-    <td class="number">3573503</td>
+    <td class="number">1378125</td>
+    <td class="number">1399317</td>
     <td>Different frequency sources have different major alleles.</td>
   </tr>
   <tr>
     <td>overlapDiffClass</td>
     <td class="number">106940656</td>
     <td class="number">109838613</td>
     <td>This variant overlaps another variant with a different type/class.</td>
   </tr>
   <tr>
     <td>overlapSameClass</td>
     <td class="number">16890303</td>
     <td class="number">17228657</td>
     <td>This variant overlaps another with the same type/class but different start/end.</td>
   </tr>
   <tr>
@@ -268,32 +268,32 @@
 <p>
 while others may indicate that the reference genome contains a rare variant or sequencing issue:
 </p>
 <table class="descTbl">
   <tr><th>keyword in data file (dbSnp153.bb)</th>
     <th># in hg19</th><th># in hg38</th><th>description</th></tr>
   <tr>
     <td>refIsAmbiguous</td>
     <td class="number">101</td>
     <td class="number">111</td>
     <td>The reference genome allele contains an IUPAC ambiguous base
       (e.g. 'R' for 'A or G', or 'N' for 'any base').</td>
   </tr>
   <tr>
     <td>refIsMinor</td>
-    <td class="number">16032028</td>
-    <td class="number">16277729</td>
+    <td class="number">3277722</td>
+    <td class="number">3364788</td>
     <td>The reference genome allele is not the major allele in at least one project.</td>
   </tr>
   <tr>
     <td>refIsRare</td>
     <td class="number">142937</td>
     <td class="number">166192</td>
     <td>The reference genome allele is rare (i.e. allele frequency < 1%).</td>
   </tr>
   <tr>
     <td>refIsSingleton</td>
     <td class="number">44382</td>
     <td class="number">56491</td>
     <td>The reference genome allele has never been observed in a population sequencing project
       reporting frequencies.</td>
   </tr>