b0132bc5984bafde279db01449f27699aefde0a3 angie Thu Nov 7 14:51:58 2019 -0800 Reworded revStrand description, thx Lou. refs #23283 diff --git src/hg/makeDb/trackDb/human/dbSnp153Composite.html src/hg/makeDb/trackDb/human/dbSnp153Composite.html index 292fae6..ff82ae6 100644 --- src/hg/makeDb/trackDb/human/dbSnp153Composite.html +++ src/hg/makeDb/trackDb/human/dbSnp153Composite.html @@ -250,33 +250,34 @@ <td class="number">681626796</td> <td>Variant is "rare", i.e. has a Minor Allele Frequency of less than 1% in all projects reporting frequencies, or has no frequency data.</td> </tr> <tr> <td>rareSome</td> <td class="number">670927558</td> <td class="number">690089717</td> <td>Variant is "rare", i.e. has a Minor Allele Frequency of less than 1% in some, but not all, projects reporting frequencies, or has no frequency data.</td> </tr> <tr> <td>revStrand</td> <td class="number">3813390</td> <td class="number">4512600</td> - <td>The orientation of the currently viewed reference genome sequence is different from - the orientation of dbSNP's preferred top-level assembly sequence; - alleles are presented on the forward strand of the currently viewed reference sequence.</td> + <td>Alleles are displayed on the + strand at the current position. + dbSNP's alleles are displayed on the + strand of a different assembly sequence, + so dbSNP's variant page shows alleles that are reverse-complemented with respect to + the alleles displayed above.</td> </tr> </table> <p> while others may indicate that the reference genome contains a rare variant or sequencing issue: </p> <table class="descTbl"> <tr><th>keyword in data file (dbSnp153.bb)</th> <th># in hg19</th><th># in hg38</th><th>description</th></tr> <tr> <td>refIsAmbiguous</td> <td class="number">101</td> <td class="number">111</td> <td>The reference genome allele contains an IUPAC ambiguous base (e.g. 'R' for 'A or G', or 'N' for 'any base').</td> </tr>