369670e8f1e34a12f871e1c7a682455cc6625f62 max Tue Nov 5 15:57:55 2019 +0100 forgot to commit a test file for chromFixer diff --git src/utils/chromFixer/tests/mm10.chromAlias.tsv src/utils/chromFixer/tests/mm10.chromAlias.tsv new file mode 100644 index 0000000..b7e97c6 --- /dev/null +++ src/utils/chromFixer/tests/mm10.chromAlias.tsv @@ -0,0 +1,154 @@ +NC_000067.6 chr1 refseq +CM000994.2 chr1 genbank +1 chr1 ensembl +NC_000076.6 chr10 refseq +CM001003.2 chr10 genbank +10 chr10 ensembl +NC_000077.6 chr11 refseq +CM001004.2 chr11 genbank +11 chr11 ensembl +NC_000078.6 chr12 refseq +CM001005.2 chr12 genbank +12 chr12 ensembl +NC_000079.6 chr13 refseq +CM001006.2 chr13 genbank +13 chr13 ensembl +NC_000080.6 chr14 refseq +CM001007.2 chr14 genbank +14 chr14 ensembl +NC_000081.6 chr15 refseq +CM001008.2 chr15 genbank +15 chr15 ensembl +NC_000082.6 chr16 refseq +CM001009.2 chr16 genbank +16 chr16 ensembl +NC_000083.6 chr17 refseq +CM001010.2 chr17 genbank +17 chr17 ensembl +NC_000084.6 chr18 refseq +CM001011.2 chr18 genbank +18 chr18 ensembl +NC_000085.6 chr19 refseq +CM001012.2 chr19 genbank +19 chr19 ensembl +NT_166280.1 chr1_GL456210_random refseq +GL456210.1 chr1_GL456210_random genbank,ensembl +NT_166281.1 chr1_GL456211_random refseq +GL456211.1 chr1_GL456211_random genbank,ensembl +NT_166282.1 chr1_GL456212_random refseq +GL456212.1 chr1_GL456212_random genbank,ensembl +NT_166283.1 chr1_GL456213_random refseq +GL456213.1 chr1_GL456213_random genbank,ensembl +NT_162750.1 chr1_GL456221_random refseq +GL456221.1 chr1_GL456221_random genbank,ensembl +NC_000068.7 chr2 refseq +CM000995.2 chr2 genbank +2 chr2 ensembl +NC_000069.6 chr3 refseq +CM000996.2 chr3 genbank +3 chr3 ensembl +NC_000070.6 chr4 refseq +CM000997.2 chr4 genbank +4 chr4 ensembl +NT_166291.1 chr4_GL456216_random refseq +GL456216.1 chr4_GL456216_random genbank,ensembl +NT_166434.1 chr4_GL456350_random refseq +GL456350.1 chr4_GL456350_random genbank,ensembl +NT_187052.1 chr4_JH584292_random refseq 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refseq +GL456219.1 chr7_GL456219_random genbank,ensembl +NC_000074.6 chr8 refseq +CM001001.2 chr8 genbank +8 chr8 ensembl +NC_000075.6 chr9 refseq +CM001002.2 chr9 genbank +9 chr9 ensembl +NC_005089.1 chrM refseq +AY172335.1 chrM genbank +MT chrM ensembl +NT_166338.1 chrUn_GL456239 refseq +GL456239.1 chrUn_GL456239 genbank,ensembl +NT_166443.1 chrUn_GL456359 refseq +GL456359.1 chrUn_GL456359 genbank,ensembl +NT_166444.1 chrUn_GL456360 refseq +GL456360.1 chrUn_GL456360 genbank,ensembl +NT_166450.1 chrUn_GL456366 refseq +GL456366.1 chrUn_GL456366 genbank,ensembl +NT_166451.1 chrUn_GL456367 refseq +GL456367.1 chrUn_GL456367 genbank,ensembl +NT_166452.1 chrUn_GL456368 refseq +GL456368.1 chrUn_GL456368 genbank,ensembl +NT_166454.1 chrUn_GL456370 refseq +GL456370.1 chrUn_GL456370 genbank,ensembl +NT_166456.1 chrUn_GL456372 refseq +GL456372.1 chrUn_GL456372 genbank,ensembl +NT_166462.1 chrUn_GL456378 refseq +GL456378.1 chrUn_GL456378 genbank,ensembl +NT_166463.1 chrUn_GL456379 refseq 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refseq +CM001013.2 chrX genbank +X chrX ensembl +NT_165789.2 chrX_GL456233_random refseq +GL456233.1 chrX_GL456233_random genbank,ensembl +NC_000087.7 chrY refseq +CM001014.2 chrY genbank +Y chrY ensembl +NT_187060.1 chrY_JH584300_random refseq +JH584300.1 chrY_JH584300_random genbank,ensembl +NT_187061.1 chrY_JH584301_random refseq +JH584301.1 chrY_JH584301_random genbank,ensembl +NT_187062.1 chrY_JH584302_random refseq +JH584302.1 chrY_JH584302_random genbank,ensembl +NT_187063.1 chrY_JH584303_random refseq +JH584303.1 chrY_JH584303_random genbank,ensembl