4e1f462b2f1a3e877ee4041550b0fd276bcaa4a2 max Tue Nov 5 16:24:55 2019 +0100 renaming chromFixer to chromToUcsc, refs #24407 diff --git src/utils/chromFixer/tests/mm10.chromAlias.tsv src/utils/chromFixer/tests/mm10.chromAlias.tsv deleted file mode 100644 index b7e97c6..0000000 --- src/utils/chromFixer/tests/mm10.chromAlias.tsv +++ /dev/null @@ -1,154 +0,0 @@ -NC_000067.6 chr1 refseq -CM000994.2 chr1 genbank -1 chr1 ensembl -NC_000076.6 chr10 refseq -CM001003.2 chr10 genbank -10 chr10 ensembl -NC_000077.6 chr11 refseq -CM001004.2 chr11 genbank -11 chr11 ensembl -NC_000078.6 chr12 refseq -CM001005.2 chr12 genbank -12 chr12 ensembl -NC_000079.6 chr13 refseq -CM001006.2 chr13 genbank -13 chr13 ensembl -NC_000080.6 chr14 refseq -CM001007.2 chr14 genbank -14 chr14 ensembl -NC_000081.6 chr15 refseq -CM001008.2 chr15 genbank -15 chr15 ensembl -NC_000082.6 chr16 refseq -CM001009.2 chr16 genbank -16 chr16 ensembl -NC_000083.6 chr17 refseq -CM001010.2 chr17 genbank -17 chr17 ensembl -NC_000084.6 chr18 refseq -CM001011.2 chr18 genbank -18 chr18 ensembl -NC_000085.6 chr19 refseq -CM001012.2 chr19 genbank -19 chr19 ensembl -NT_166280.1 chr1_GL456210_random refseq -GL456210.1 chr1_GL456210_random genbank,ensembl -NT_166281.1 chr1_GL456211_random refseq -GL456211.1 chr1_GL456211_random genbank,ensembl -NT_166282.1 chr1_GL456212_random refseq -GL456212.1 chr1_GL456212_random genbank,ensembl -NT_166283.1 chr1_GL456213_random refseq -GL456213.1 chr1_GL456213_random genbank,ensembl -NT_162750.1 chr1_GL456221_random refseq -GL456221.1 chr1_GL456221_random genbank,ensembl -NC_000068.7 chr2 refseq -CM000995.2 chr2 genbank -2 chr2 ensembl -NC_000069.6 chr3 refseq -CM000996.2 chr3 genbank -3 chr3 ensembl -NC_000070.6 chr4 refseq -CM000997.2 chr4 genbank -4 chr4 ensembl -NT_166291.1 chr4_GL456216_random refseq -GL456216.1 chr4_GL456216_random genbank,ensembl -NT_166434.1 chr4_GL456350_random refseq -GL456350.1 chr4_GL456350_random genbank,ensembl -NT_187052.1 chr4_JH584292_random refseq -JH584292.1 chr4_JH584292_random genbank,ensembl -NT_187053.1 chr4_JH584293_random refseq -JH584293.1 chr4_JH584293_random genbank,ensembl -NT_187054.1 chr4_JH584294_random refseq -JH584294.1 chr4_JH584294_random genbank,ensembl -NT_187055.1 chr4_JH584295_random refseq -JH584295.1 chr4_JH584295_random genbank,ensembl -NC_000071.6 chr5 refseq -CM000998.2 chr5 genbank -5 chr5 ensembl -NT_166438.1 chr5_GL456354_random refseq -GL456354.1 chr5_GL456354_random genbank,ensembl -NT_187056.1 chr5_JH584296_random refseq -JH584296.1 chr5_JH584296_random genbank,ensembl -NT_187057.1 chr5_JH584297_random refseq -JH584297.1 chr5_JH584297_random genbank,ensembl -NT_187058.1 chr5_JH584298_random refseq -JH584298.1 chr5_JH584298_random genbank,ensembl -NT_187059.1 chr5_JH584299_random refseq -JH584299.1 chr5_JH584299_random genbank,ensembl -NC_000072.6 chr6 refseq -CM000999.2 chr6 genbank -6 chr6 ensembl -NC_000073.6 chr7 refseq -CM001000.2 chr7 genbank -7 chr7 ensembl -NT_166307.1 chr7_GL456219_random refseq -GL456219.1 chr7_GL456219_random genbank,ensembl -NC_000074.6 chr8 refseq -CM001001.2 chr8 genbank -8 chr8 ensembl -NC_000075.6 chr9 refseq -CM001002.2 chr9 genbank -9 chr9 ensembl -NC_005089.1 chrM refseq -AY172335.1 chrM genbank -MT chrM ensembl -NT_166338.1 chrUn_GL456239 refseq -GL456239.1 chrUn_GL456239 genbank,ensembl -NT_166443.1 chrUn_GL456359 refseq -GL456359.1 chrUn_GL456359 genbank,ensembl -NT_166444.1 chrUn_GL456360 refseq -GL456360.1 chrUn_GL456360 genbank,ensembl -NT_166450.1 chrUn_GL456366 refseq -GL456366.1 chrUn_GL456366 genbank,ensembl -NT_166451.1 chrUn_GL456367 refseq -GL456367.1 chrUn_GL456367 genbank,ensembl -NT_166452.1 chrUn_GL456368 refseq -GL456368.1 chrUn_GL456368 genbank,ensembl -NT_166454.1 chrUn_GL456370 refseq -GL456370.1 chrUn_GL456370 genbank,ensembl -NT_166456.1 chrUn_GL456372 refseq -GL456372.1 chrUn_GL456372 genbank,ensembl -NT_166462.1 chrUn_GL456378 refseq -GL456378.1 chrUn_GL456378 genbank,ensembl -NT_166463.1 chrUn_GL456379 refseq -GL456379.1 chrUn_GL456379 genbank,ensembl -NT_166465.1 chrUn_GL456381 refseq -GL456381.1 chrUn_GL456381 genbank,ensembl -NT_166466.1 chrUn_GL456382 refseq -GL456382.1 chrUn_GL456382 genbank,ensembl -NT_166467.1 chrUn_GL456383 refseq -GL456383.1 chrUn_GL456383 genbank,ensembl -NT_166469.1 chrUn_GL456385 refseq -GL456385.1 chrUn_GL456385 genbank,ensembl -NT_166471.1 chrUn_GL456387 refseq -GL456387.1 chrUn_GL456387 genbank,ensembl -NT_166473.1 chrUn_GL456389 refseq -GL456389.1 chrUn_GL456389 genbank,ensembl -NT_166474.1 chrUn_GL456390 refseq -GL456390.1 chrUn_GL456390 genbank,ensembl -NT_166476.1 chrUn_GL456392 refseq -GL456392.1 chrUn_GL456392 genbank,ensembl -NT_166477.1 chrUn_GL456393 refseq -GL456393.1 chrUn_GL456393 genbank,ensembl -NT_166478.1 chrUn_GL456394 refseq -GL456394.1 chrUn_GL456394 genbank,ensembl -NT_166480.1 chrUn_GL456396 refseq -GL456396.1 chrUn_GL456396 genbank,ensembl -NT_187064.1 chrUn_JH584304 refseq -JH584304.1 chrUn_JH584304 genbank,ensembl -NC_000086.7 chrX refseq -CM001013.2 chrX genbank -X chrX ensembl -NT_165789.2 chrX_GL456233_random refseq -GL456233.1 chrX_GL456233_random genbank,ensembl -NC_000087.7 chrY refseq -CM001014.2 chrY genbank -Y chrY ensembl -NT_187060.1 chrY_JH584300_random refseq -JH584300.1 chrY_JH584300_random genbank,ensembl -NT_187061.1 chrY_JH584301_random refseq -JH584301.1 chrY_JH584301_random genbank,ensembl -NT_187062.1 chrY_JH584302_random refseq -JH584302.1 chrY_JH584302_random genbank,ensembl -NT_187063.1 chrY_JH584303_random refseq -JH584303.1 chrY_JH584303_random genbank,ensembl