54452ec022a6073410955c04e110a1784f71fb57
angie
  Wed Nov 13 17:37:34 2019 -0800
dbSnp153: add new ucscNote otherMapErr for mappings with the same rs# as a mapping w/inconsistent SPDI in BadCoords/Map Err subtrack.  refs #23283

diff --git src/hg/lib/bigDbSnp.c src/hg/lib/bigDbSnp.c
index 1116859..9fd0390 100644
--- src/hg/lib/bigDbSnp.c
+++ src/hg/lib/bigDbSnp.c
@@ -326,30 +326,32 @@
       "Variant is \"common\", i.e. has a Minor Allele Frequency of at least 1% "
       "in all projects reporting frequencies." },
     { bdsCommonSome,
       "Variant is \"common\", i.e. has a Minor Allele Frequency of at least 1% "
       "in some, but not all, projects reporting frequencies." },
     { bdsDiffMajor,
       "Different frequency sources have different major alleles "
       "(see table of allele frequencies above)." },
     { bdsFreqIsAmbiguous,
       "At least one allele reported by at least one project "
       "contains an IUPAC ambiguous base (e.g. 'R' for 'A or G')." },
     { bdsFreqNotRefAlt,
       "The reference genome allele is not the major allele in at least one project." },
     { bdsMultiMap,
       "This variant has been mapped to more than one distinct genomic location." },
+    { bdsOtherMapErr,
+      "Another mapping of this variant has illegal coordinates implying indel mapping error." },
     { bdsOverlapDiffClass,
       "This variant overlaps another variant with a different type/class." },
     { bdsOverlapSameClass,
       "This variant overlaps another with the same type/class but different start/end." },
     { bdsRareAll,
       "Variant is \"rare\", i.e. has a Minor Allele Frequency of less than 1% "
       "in all projects reporting frequencies, or has no frequency data." },
     { bdsRareSome,
       "Variant is \"rare\", i.e. has a Minor Allele Frequency of less than 1% "
       "in some, but not all, projects reporting frequencies." },
     { bdsRefIsAmbiguous,
       "The reference genome allele "
       "contains an IUPAC ambiguous base (e.g. 'R' for 'A or G')." },
     { bdsRefIsMinor,
       "The reference genome allele is not the major allele in at least one project." },