fb4afc46f3325587835703961810e8100ef5dc4c braney Sat Nov 16 07:43:50 2019 -0800 trying to eliminate " jobserver unavailable:" message from python invocation that I can't replicate diff --git src/utils/chromToUcsc/tests/makefile src/utils/chromToUcsc/tests/makefile index 3ac9e16..21061f6 100644 --- src/utils/chromToUcsc/tests/makefile +++ src/utils/chromToUcsc/tests/makefile @@ -1,14 +1,14 @@ all: mkdir -p out # alas, our automated tests cannot output anything to stderr, as otherwise emails will be sent - python2 `which chromToUcsc` -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null - python2 `which chromToUcsc` -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null + +python2 `which chromToUcsc` -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null + +python2 `which chromToUcsc` -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null diff out/hg19.bed expected/hg19.bed diff out/mm10.bed expected/mm10.bed - python3 `which chromToUcsc` -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null - python3 `which chromToUcsc` -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null + +python3 `which chromToUcsc` -i in/hg19.bed -o out/hg19.bed -g hg19 -a hg19.chromAlias.tsv 2> /dev/null + +python3 `which chromToUcsc` -i in/mm10.bed -o out/mm10.bed -a mm10.chromAlias.tsv 2> /dev/null diff out/hg19.bed expected/hg19.bed diff out/mm10.bed expected/mm10.bed clean: rm -f out/*