38c7c561433f79dd7b6a73571b4dde2e58091734
dschmelt
  Wed Nov 13 10:30:11 2019 -0800
Alphabetizing Hic entry #22316

diff --git src/hg/htdocs/FAQ/FAQformat.html src/hg/htdocs/FAQ/FAQformat.html
index bc4f286..5b3d43f 100755
--- src/hg/htdocs/FAQ/FAQformat.html
+++ src/hg/htdocs/FAQ/FAQformat.html
@@ -512,32 +512,47 @@
 sub-alignments, as well as the ability to add, remove and update genomes within the alignment with 
 only local modifications to the structure. Another important feature of HAL is reference 
 independence: alignments in this format can be queried with respect to the coordinates of any 
 genome they contain. </p> 
 <p> 
 HAL files can be created or read with a comprehensive C++ API (click 
 <a href="https://github.com/glennhickey/hal" target="_blank">here</a> for source code and manual). 
 A set of command line tools is included to perform basic operations, such as importing and exporting
 data, identifying mutations, coordinate mapping (liftOver), and comparative assembly hub 
 generation.</p> 
 <p> 
 HAL is the native output format of the Progressive Cactus alignment pipeline, and is included in 
 the <a href="https://github.com/glennhickey/progressiveCactus" 
 target="_blank">Progressive Cactus</a> installation package.</p>
 
+<a name="format23"></a>
+<h2>Hic format</h2>
+<p>
+Hic files are binary files that store contact matrices from chromatin conformation experiments.
+This format is useful for displaying interactions at a scale and depth that exceeds what can be
+easily visualized with the interact and bigInteract formats.  See the
+<a href="../goldenPath/help/hic.html">hic Track Format</a> help page for more information on
+creating and configuring hic tracks.  More information on the hic format itself can be found in the
+documentation on <a href="https://github.com/aidenlab/juicer/wiki/Data/#hic-files"
+target="_blank">Github</a>.  The hic format was created by the <a href="https://www.aidenlab.org"
+target="_blank">Aiden Lab</a> at <a href="https://www.bcm.edu"
+target="_blank">Baylor College of Medicine</a>.
+</p>
+
+
 <a name="format22"></a>
-<h2>interact format</h2>
+<h2>Interact format</h2>
 <p>
 The interact (and bigInteract) track format displays pairwise interactions as arcs or 
 half-rectangles connecting two genomic regions on the same chromosome.
 Cross-chromosomal interactions can also be represented in this format.
 This format is useful for displaying functional element interactions such
 as SNP/gene interactions, and is also suitable for low-density chromatin interactions,
 such as ChIA-PET, and other use cases with a limited number of interactions on the genome.  
 It is not suitable for high-density chromatin data such as Hi-C.</p>
 <p>
 Click <a href="../goldenPath/help/interact.html">here</a> for more information on the interact and
 bigInteract formats.</p>
 
 <a name="format5"></a>
 <h2>MAF format</h2> 
 <p> 
@@ -1532,30 +1547,16 @@
   <strong>peptideRepeatCount</strong> - Indicates how many times this same hit was observed.</li>
 </ol>
 
 <a name="format18"></a>
 <h2>Fasta format</h2>
 <p>
 Click <a href="http://genetics.bwh.harvard.edu/pph/FASTA.html" target="_blank">here</a> for 
 information about fasta format.</p>
 
 <a name="format19"></a>
 <h2>FastQ format</h2>
 <p> 
 Click <a href="http://maq.sourceforge.net/fastq.shtml" target="_blank">here</a> for information
 about fastq format.</p>
 
-<a name="format23"></a>
-<h2>hic format</h2>
-<p>
-Hic files are binary files that store contact matrices from chromatin conformation experiments.
-This format is useful for displaying interactions at a scale and depth that exceeds what can be
-easily visualized with the interact and bigInteract formats.  See the
-<a href="../goldenPath/help/hic.html">hic Track Format</a> help page for more information on
-creating and configuring hic tracks.  More information on the hic format itself can be found in the
-documentation on <a href="https://github.com/aidenlab/juicer/wiki/Data/#hic-files"
-target="_blank">github</a>.  The hic format was created by the <a href="https://www.aidenlab.org"
-target="_blank">Aiden Lab</a> at <a href="https://www.bcm.edu"
-target="_blank">Baylor College of Medicine</a>.
-</p>
-
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