1d8224c24263f3d0e6a418e59e86f5a8b867740f markd Sat Nov 16 16:51:42 2019 -0800 import of GENCODE VM24 prerelease diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index 1e24cf9..71cade7 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -566,31 +566,31 @@ 2019-11-15: import of UCSC GENCODE group processing of GENCODE V32 (markd) # PRE-RELEASE # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV33 pushd /hive/data/genomes/hg38/bed/gencodeV33 (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb - ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 33 40 'Nov 2019' + ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 33 99 'Nov 2019' # If being pushed public, update 'Release Notes' in # human/hg38/wgEncodeGencodeSuper.html # edit human/hg38/trackDb.gencode.ra to add new .ra file include make DBS=hg38 ## only if being pushed to RR: # edit all.joiner to add ~/tmp/gencodeV33.joiner # verify with: pushd /hive/data/genomes/hg38/bed/gencodeV33 make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck # commit all