e93b87d527fd5d292fc0dcf78ab4fc021bb9a383
markd
  Sat Nov 16 16:17:17 2019 -0800
deleted junk accidently left in build doc

diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt
index 5eeea9b..1e24cf9 100644
--- src/hg/makeDb/doc/hg38/gencode.txt
+++ src/hg/makeDb/doc/hg38/gencode.txt
@@ -583,27 +583,15 @@
     # If being pushed public, update 'Release Notes' in
     # human/hg38/wgEncodeGencodeSuper.html
 
     # edit human/hg38/trackDb.gencode.ra to add new .ra file include
     make DBS=hg38
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeV33.joiner
     # verify with:
     pushd /hive/data/genomes/hg38/bed/gencodeV33
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
     # commit all
 
 #########################################################################
-
-if fgrep Error: check/joiner.out ; then false;  else true; fi
-Error: 6 of 20572 elements (0.029%) of hg38.wgEncodeGencodePseudoGeneV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2645 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-Error: 857 of 226969 elements (0.378%) of hg38.wgEncodeGencodeCompV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2640 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-Error: 703 of 100360 elements (0.700%) of hg38.wgEncodeGencodeBasicV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2635 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-Error: 703 of 100360 elements (0.700%) of hg38.wgEncodeGencodeBasicV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2635 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-Error: 857 of 226969 elements (0.378%) of hg38.wgEncodeGencodeCompV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2640 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-Error: 6 of 20572 elements (0.029%) of hg38.wgEncodeGencodePseudoGeneV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2645 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-make: *** [joinerCheck] Error 1
-
-Error: 857 of 226969 elements (0.378%) of hg38.wgEncodeGencodeCompV33.name are not in key wgEncodeGencodeAttrsV33.transcriptId line 2640 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
-hgsql  hg38 -Ne 'select name from wgEncodeGencodeCompV33 where name not in  (select transcriptId  from wgEncodeGencodeAttrsV33)' >~/tmp/comp.ids