1d8224c24263f3d0e6a418e59e86f5a8b867740f
markd
  Sat Nov 16 16:51:42 2019 -0800
import of GENCODE VM24 prerelease

diff --git src/hg/makeDb/doc/mm10.txt src/hg/makeDb/doc/mm10.txt
index ae8627b..6d08727 100644
--- src/hg/makeDb/doc/mm10.txt
+++ src/hg/makeDb/doc/mm10.txt
@@ -18262,15 +18262,51 @@
 IO & Wait Time:                150120s    2502.01m    41.70h    1.74d  0.005 y
 Average job time:                 523s       8.72m     0.15h    0.01d
 Longest finished job:            1966s      32.77m     0.55h    0.02d
 Submission to last job:         15067s     251.12m     4.19h    0.17d
 
 # offTargets:
 Completed: 147394 of 147394 jobs
 CPU time in finished jobs:    2213680s   36894.66m   614.91h   25.62d  0.070 y
 IO & Wait Time:               2663355s   44389.25m   739.82h   30.83d  0.084 y
 Average job time:                  33s       0.55m     0.01h    0.00d
 Longest finished job:              68s       1.13m     0.02h    0.00d
 
 #########################################################################
 
 # For ENCODE 3 tracks, see doc/encode3/mouse.txt
+
+##############################################################################
+2019-11-16: import of UCSC GENCODE group processing of GENCODE VM24 (markd)
+    # PRE-RELEASE
+
+    # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions
+
+    # download, build and load tables
+    mkdir -p /hive/data/genomes/mm10/bed/gencodeVM24
+    pushd /hive/data/genomes/mm10/bed/gencodeVM24
+
+    (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out&
+
+    # compare tables from previous release to see if number changed makes
+    # sense.  Results are in gencode-cmp.tsv
+
+    # generate trackDb and joiner blurb
+    pushd ~/kent/src/hg/makeDb/trackDb
+    ../../makeDb/outside/gencode/gencodeGenerateTrackDbs mm10 M24 99 'Nov 2019'
+
+    # If being pushed public, update 'Release Notes' in
+    # human/mm10/wgEncodeGencodeSuper.html
+
+    # edit human/mm10/trackDb.gencode.ra to add new .ra file include
+    make DBS=mm10
+
+    ## only if being pushed to RR:
+    # edit all.joiner to add ~/tmp/gencodeVM24.joiner
+    # verify with:
+    pushd /hive/data/genomes/mm10/bed/gencodeVM24
+    make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
+
+    # commit all
+    # if pushing public: add ticket and MARK QA READY
+
+#########################################################################