1d8224c24263f3d0e6a418e59e86f5a8b867740f markd Sat Nov 16 16:51:42 2019 -0800 import of GENCODE VM24 prerelease diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 5916ba7..a30cf41 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,44 +23,44 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## -db = hg38 +#db = hg38 #db = hg19 -#db = mm10 +db = mm10 #preRelease = no preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 - ver = M23 - prevVer = M22 + ver = M24 + prevVer = M23 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation - ensemblVer = 97_39 - ensemblPrevVer = 96_38 + ensemblVer = 99_38 + ensemblPrevVer = 98_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 33 prevVer = 32 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 99_38 ensemblPrevVer = 98_38 ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer} else ifeq (${db},hg19) grcRefAssembly = GRCh37 verBase = 32 ver = ${verBase}lift37