4440223fad68a002964802e0ecf3b1b94cb28503
markd
  Sat Nov 16 10:11:29 2019 -0800
import of gencode V33 prerelase

diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk
index 7158400..5916ba7 100644
--- src/hg/makeDb/outside/gencode/gencodeLoad.mk
+++ src/hg/makeDb/outside/gencode/gencodeLoad.mk
@@ -23,54 +23,54 @@
 SHELL = bash -e
 export SHELLOPTS=pipefail
 
 ##
 # programs, etc
 ##
 mach = $(shell uname -m)
 
 ##
 # Release info and files from Sanger.
 # BEGIN EDIT THESE EACH RELEASE
 #
 # - ensemblPrevVersion is use to get chrom name mappings for pre-release,
 #   as this doesn't change between release.
 ##
-#db = hg38
-db = hg19
+db = hg38
+#db = hg19
 #db = mm10
-preRelease = no
-#preRelease = yes
+#preRelease = no
+preRelease = yes
 ifeq (${db},mm10)
     grcRefAssembly = GRCm38
     ver = M23
     prevVer = M22
     gencodeOrg = Gencode_mouse
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
     ensemblVer = 97_39
     ensemblPrevVer = 96_38
     ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer}
 else ifeq (${db},hg38)
     grcRefAssembly = GRCh38
-    ver = 32
-    prevVer = 31
+    ver = 33
+    prevVer = 32
     gencodeOrg = Gencode_human
     ftpReleaseSubdir = release_${ver}
     annGffTypeName = chr_patch_hapl_scaff.annotation
-    ensemblVer = 97_39
-    ensemblPrevVer = 96_38
+    ensemblVer = 99_38
+    ensemblPrevVer = 98_38
     ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer}
 else ifeq (${db},hg19)
     grcRefAssembly = GRCh37
     verBase = 32
     ver = ${verBase}lift37
     backmapTargetVer = 19
     ftpReleaseSubdir = release_${verBase}/GRCh37_mapping
     prevVer = 29lift37
     gencodeOrg = Gencode_human
     annGffTypeName = annotation
     ensemblVer = 74_37      # only used to get genome chromsome name mappings
     ensemblPrevVer = ${ensemblVer}  # doesn't change
     ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer}
     isBackmap = yes
 else