Commits for angie

v392_preview2 to v392_base (2019-12-16 to 2020-01-06) v392

e60a2fbdbcf11780a7d3119cbdeeacc1b09d8ba9 Fri Dec 13 16:03:11 2019 -0800

• just happened to notice a missing <dl> start tag before a list.
  • src/hg/makeDb/trackDb/human/hg38/gnomad.html - lines changed 1, context: html, text, full: html, text

07b62ff4770ca7b072ed3988e47c3898527c4c68 Wed Dec 18 09:46:43 2019 -0800

• David pointed out that the order of genotypes in GnomAD v2's GC tags was not obvious and not described by the INFO headers -- adding explanation. refs #24620
  • src/hg/makeDb/trackDb/human/hg19/gnomad.html - lines changed 22, context: html, text, full: html, text

87165caa138700c2f604737f7448685797bf1954 Wed Dec 18 14:20:37 2019 -0800

• Apply same base and indel coloring defaults to BAM tracks in hgTrackUi as in hgTracks. refs #24674
  • src/hg/hgTracks/bamTrack.c - lines changed 25, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 34, context: html, text, full: html, text

b3d7beaa964c90d43a6acea6292f34eef5cd1b4d Wed Dec 18 16:10:12 2019 -0800

• In pack mode, sorting by position at draw time is too late -- items have been packed before draw time, so sort by position at load time.
  • src/hg/hgTracks/variation.c - lines changed 2, context: html, text, full: html, text

129c29c899a77f6ace96555dd586e43ed1b83812 Fri Dec 20 14:55:02 2019 -0800

• Adding 'release alpha' for dbSnp152 which will remain hgwdev-only. refs #24690
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text