1e0b1b2cbd35e8c79caff322317c93365c8cc5a8
brianlee
  Tue Dec 17 08:18:58 2019 -0800
Removing td from htmlCheck and a section about rsync on gbib.html

diff --git src/hg/htdocs/goldenPath/help/gbib.html src/hg/htdocs/goldenPath/help/gbib.html
index 4d25100..65816a2 100755
--- src/hg/htdocs/goldenPath/help/gbib.html
+++ src/hg/htdocs/goldenPath/help/gbib.html
@@ -11,31 +11,30 @@
 
 <h6><a href="#What">What is Genome Browser in a Box (GBiB)?</a></h6>
 <h6><a href="#GetStarted">Getting Started: Setting up Genome Browser in a Box</a></h6>
 <h6><a href="#UsingGbib">Using Genome Browser in a Box</a></h6>
 <h6><a href="#GbibMirroring">Improving speed and performance</a></h6>
 <h6><a href="#UpdatingGbib">Updating Genome Browser in a Box</a></h6>
 <h6><a href="#YourTracks">Viewing your own data</a></h6>
 <h6><a href="#SharingGBIB">Sharing Genome Browser in a Box with others</a></h6>
 <h6><a href="#UsrAcct">User accounts and sessions</a></h6>
 <h6><a href="#Trouble">Troubleshooting common problems</a></h6>
 <h6><a href="#Commands">Genome Browser in a Box commands</a></h6>
 <h6><a href="#License">Licensing information</a></h6>
 <hr>
 <p>
 <strong>Other resources:</strong>
-<td>
   <ul><strong>
     <li><a class="toc" href="http://genome.ucsc.edu/blog/genome-browser-in-a-box-gbib-origins/" 
      target="_blank">UCSC blog post about GBiB</a></li>
     <li><a class="toc" href="https://www.youtube.com/watch?v=1DzZZgB1gvQ" target="_blank">GBiB 
     introductory video</a></li>
   </strong></ul>
 
 <a name="What"></a>
 <h2>What is Genome Browser in a Box?</h2>
 <p>
 Genome Browser in a Box (GBiB) is a &quot;virtual machine&quot; of the entire UCSC Genome Browser 
 website that is designed to run on most PCs (Windows, Mac OSX or Linux). GBiB allows you to access 
 much of the UCSC Genome Browser's functionality from the comfort of your own computer. It is 
 particularly directed at individuals who want to use the Genome Browser toolset to view protected 
 data. If it is not human sequencing reads, it usually does not fall under
@@ -271,30 +270,39 @@
 If you are in your GBiB on the command-line you can use a direct rsync command for files of
 interest. For example, if you knew you wanted all the GENCODE tracks on hg19 you could run either
 of the two rsync commands for the North American or European hgdownload servers:
 <pre>
 <code>sudo rsync hgdownload.soe.ucsc.edu::mysql/hg19/wgEncodeGencode* /data/mysql/hg19/.</code>
 </pre>
 <pre>
 <code>sudo rsync hgdownload-euro.soe.ucsc.edu::mysql/hg19/wgEncodeGencode* /data/mysql/hg19/.</code>
 </pre>
 <p>
 The above commands will rsync all of the files at the UCSC hgdownload server in the hg19 assembly
 that start with wgEncodeGencode to your GBiB into the hg19 directory. There are some supporting
 files in a hgFixed directory, such as for the publication tracks, that could be mirrored with such
 commands.</p>
 <p>
+Here is another example for hg38 where the following commands would download all the supporting
+encRegTfbs and factorbook tables for the Transcription Factor ChIP-seq Clusters track:
+<pre>
+<code>sudo rsync hgdownload.soe.ucsc.edu::mysql/hg38/encRegTfbs* /data/mysql/hg38/.</code>
+</pre>
+<pre>
+<code>sudo rsync hgdownload.soe.ucsc.edu::mysql/hg38/factor* /data/mysql/hg38/.</code>
+</pre>
+<p>
 You can also download gbdb files in this manner.
 <pre>
 <code>sudo rsync hgdownload.soe.ucsc.edu::gbdb/hg19/multiz100way/phyloP100way.wib /data/gbdb/hg19/multiz100way/.</code>
 </pre>
 
 <pre>
 <code>sudo rsync hgdownload-euro.soe.ucsc.edu::gbdb/hg19/multiz100way/phyloP100way.wib /data/gbdb/hg19/multiz100way/.</code>
 </pre>
 
 <p>The above command would copy the phyloP100way track to display in the GBiB from a local file.</p>
 
 <h3>Offline mode</h3>
 <p>
 GBiB has an offline mode that is particularly useful when you want to ensure that GBiB no longer 
 connects to the Internet once the initial download and setup are complete (for instance, to comply