8bde61c3efd8828518d70bfc287c600b86683f68
hiram
  Thu Jan 2 13:22:14 2020 -0800
add hub.txt and groups.txt copies refs #24354

diff --git src/hg/makeDb/doc/globalReference/makefile src/hg/makeDb/doc/globalReference/makefile
index 3322f85..37c188d 100644
--- src/hg/makeDb/doc/globalReference/makefile
+++ src/hg/makeDb/doc/globalReference/makefile
@@ -1,28 +1,36 @@
 # for GNU Make automatic variable documentation, see also:
 # https://www.gnu.org/software/make/manual/html_node/Automatic-Variables.html
 
 Name="GlobalReference"
 destDir=/hive/data/genomes/asmHubs/globalReference
 srcDir=${HOME}/kent/src/hg/makeDb/doc/globalReference
 
-all:: ${destDir}/genomes.txt
+all:: ${destDir}/hub.txt ${destDir}/groups.txt ${destDir}/genomes.txt
 
 abc:: ${destDir}/hub.txt ${destDir}/groups.txt
 	@ls -og ${destDir}/index.html ${destDir}/asmStats${Name}.html
 	@ls -og ${destDir}/commonNameOrder.list
 	@ls -og $^
 
 # this mkHubIndex.pl also writes out a commonNameOrder.list that
 # is used by mkAsmStats.pl and mkGenomes.pl to order their listings
 
 ${destDir}/index.html: ${srcDir}/mkHubIndex.pl ${srcDir}/commonNames.txt ${classList}
 	cd ${destDir} && ${srcDir}/mkHubIndex.pl > $@
 	chmod 775 $@
 
 ${destDir}/genomes.txt:  ${destDir}/asmStats${Name}.html ${srcDir}/mkGenomes.pl ${srcDir}/mkSymLinks.sh
 	cd ${destDir} && ${srcDir}/mkGenomes.pl > $@
 	cd ${destDir} && ${srcDir}/mkSymLinks.sh
 
 ${destDir}/asmStats${Name}.html: ${destDir}/index.html ${srcDir}/mkAsmStats.pl
 	cd ${destDir} && ${srcDir}/mkAsmStats.pl > $@
 	chmod 775 $@
+
+${destDir}/hub.txt: ${srcDir}/hub.txt
+	rm -f ${destDir}/hub.txt
+	cp -p ${srcDir}/hub.txt ${destDir}/hub.txt
+
+${destDir}/groups.txt: ${srcDir}/groups.txt
+	rm -f ${destDir}/groups.txt
+	cp -p ${srcDir}/groups.txt ${destDir}/groups.txt