2feb808479d0767a519a687c3948b1a21f1e8431
hiram
  Fri Jan 3 13:31:23 2020 -0800
initial set of files to create symlinks and index pages refs #20137

diff --git src/hg/makeDb/doc/primateAsmHub/makefile src/hg/makeDb/doc/primateAsmHub/makefile
new file mode 100644
index 0000000..b51efbb
--- /dev/null
+++ src/hg/makeDb/doc/primateAsmHub/makefile
@@ -0,0 +1,37 @@
+
+Name="Primates"
+destDir=/hive/data/genomes/asmHubs/primates
+srcDir=${HOME}/kent/src/hg/makeDb/doc/primateAsmHub
+
+all:: makeDirs ${destDir}/hub.txt ${destDir}/groups.txt ${destDir}/genomes.txt \
+	${destDir}/index.html ${destDir}/asmStats${Name}.html
+
+makeDirs:
+	mkdir -p ${destDir}
+	${srcDir}/mkSymLinks.pl
+
+${destDir}/index.html: ${srcDir}/mkHubIndex.pl
+	${srcDir}/mkHubIndex.pl > $@
+	sed -e "s/hgdownload.soe/genome-test.gi/g; s/asmStats${Name}/testAsmStats${Name}/;" $@ > ${destDir}/testIndex.html
+	chmod +x $@ ${destDir}/testIndex.html
+
+${destDir}/asmStats${Name}.html: ${srcDir}/mkAsmStats.pl
+	${srcDir}/mkAsmStats.pl > $@
+	sed -e "s/hgdownload.soe/genome-test.gi/g; s/asmStats${Name}/testAsmStats${Name}/;" $@ > ${destDir}/testAsmStats${Name}.html
+	chmod +x $@ ${destDir}/testAsmStats${Name}.html
+
+${destDir}/genomes.txt:  ${srcDir}/mkGenomes.pl \
+	${srcDir}/primates.asmId.commonName.tsv \
+	${srcDir}/primates.commonName.asmId.orderList.tsv
+	${srcDir}/mkGenomes.pl > $@
+
+# ${destDir}/genomes.txt:  ${destDir}/asmStats${Name}.html ${srcDir}/mkGenomes.pl ${srcDir}/mkSymLinks.sh
+#	cd ${destDir} && ${srcDir}/mkSymLinks.sh
+
+${destDir}/hub.txt: ${srcDir}/hub.txt
+	rm -f ${destDir}/hub.txt
+	cp -p ${srcDir}/hub.txt ${destDir}/hub.txt
+
+${destDir}/groups.txt: ${srcDir}/groups.txt
+	rm -f ${destDir}/groups.txt
+	cp -p ${srcDir}/groups.txt ${destDir}/groups.txt