bc1bc0142ca75c78a0d1f183a293eb509e8e571c jcasper Mon Dec 23 15:54:23 2019 -0800 Added enhLutNer1 rhesus/Macaca mulatta; refs #23771 diff --git src/hg/makeDb/genbank/etc/genbank.conf src/hg/makeDb/genbank/etc/genbank.conf index 23877e1..2acd45c 100644 --- src/hg/makeDb/genbank/etc/genbank.conf +++ src/hg/makeDb/genbank/etc/genbank.conf @@ -3352,30 +3352,45 @@ musFur1.serverGenome = /hive/data/genomes/musFur1/musFur1.2bit musFur1.ooc = /hive/data/genomes/musFur1/jkStuff/musFur1.11.ooc musFur1.lift = no musFur1.perChromTables = no musFur1.refseq.mrna.native.pslCDnaFilter = ${ordered.refseq.mrna.native.pslCDnaFilter} musFur1.refseq.mrna.xeno.pslCDnaFilter = ${ordered.refseq.mrna.xeno.pslCDnaFilter} musFur1.genbank.mrna.native.pslCDnaFilter = ${ordered.genbank.mrna.native.pslCDnaFilter} musFur1.genbank.mrna.xeno.pslCDnaFilter = ${ordered.genbank.mrna.xeno.pslCDnaFilter} musFur1.genbank.est.native.pslCDnaFilter = ${ordered.genbank.est.native.pslCDnaFilter} musFur1.refseq.mrna.native.load = yes musFur1.refseq.mrna.xeno.load = yes musFur1.genbank.mrna.xeno.load = no musFur1.genbank.est.native.load = yes musFur1.downloadDir = musFur1 +# enhLutNer1 Enhydra lutris nereis (southern sea otter) (genbank assembly GCA_006410715.1) +enhLutNer1.serverGenome = /hive/data/genomes/enhLutNer1/enhLutNer1.2bit +enhLutNer1.ooc = /hive/data/genomes/enhLutNer1/jkStuff/enhLutNer1.11.ooc +enhLutNer1.lift = no +enhLutNer1.perChromTables = no +enhLutNer1.refseq.mrna.native.pslCDnaFilter = ${ordered.refseq.mrna.native.pslCDnaFilter} +enhLutNer1.refseq.mrna.xeno.pslCDnaFilter = ${ordered.refseq.mrna.xeno.pslCDnaFilter} +enhLutNer1.genbank.mrna.native.pslCDnaFilter = ${ordered.genbank.mrna.native.pslCDnaFilter} +enhLutNer1.genbank.mrna.xeno.pslCDnaFilter = ${ordered.genbank.mrna.xeno.pslCDnaFilter} +enhLutNer1.genbank.est.native.pslCDnaFilter = ${ordered.genbank.est.native.pslCDnaFilter} +enhLutNer1.genbank.est.xeno.pslCDnaFilter = ${ordered.genbank.est.xeno.pslCDnaFilter} +enhLutNer1.downloadDir = enhLutNer1 +enhLutNer1.refseq.mrna.native.load = yes +enhLutNer1.refseq.mrna.xeno.load = yes + # oryLat2 (Oryzias latipes - Medaka) oryLat2.serverGenome = /hive/data/genomes/oryLat2/oryLat2.2bit oryLat2.lift = /hive/data/genomes/oryLat2/jkStuff/liftAll.lft oryLat2.perChromTables = no oryLat2.refseq.mrna.native.pslCDnaFilter = ${ordered.refseq.mrna.native.pslCDnaFilter} oryLat2.refseq.mrna.xeno.pslCDnaFilter = ${ordered.refseq.mrna.xeno.pslCDnaFilter} oryLat2.genbank.mrna.native.pslCDnaFilter = ${ordered.genbank.mrna.native.pslCDnaFilter} oryLat2.genbank.mrna.xeno.pslCDnaFilter = ${ordered.genbank.mrna.xeno.pslCDnaFilter} oryLat2.genbank.est.native.pslCDnaFilter = ${ordered.genbank.est.native.pslCDnaFilter} oryLat2.ooc = /hive/data/genomes/oryLat2/11.ooc # DO NOT NEED genbank.mrna.xeno except for human, mouse oryLat2.genbank.mrna.xeno.load = yes oryLat2.refseq.mrna.native.load = yes oryLat2.refseq.mrna.xeno.load = yes oryLat2.downloadDir = oryLat2