b045a054fe063e155ecc27327079cf62a53ff63b
bnguy
  Fri Jan 17 14:03:13 2020 -0800
Deleting psychic, adding UCSC Cell Atlas refs #23930 #23931

diff --git src/hg/cirm/gateway/htdocs/tools.html src/hg/cirm/gateway/htdocs/tools.html
index 05862e2..0fcf41c 100755
--- src/hg/cirm/gateway/htdocs/tools.html
+++ src/hg/cirm/gateway/htdocs/tools.html
@@ -202,91 +202,56 @@
             relationships between the cells.</p>
             </li>
           </ul>
         </div>
         <div class="card-footer">
           <small class="text-muted">
           RIGGLE was created by Dan Carlin.
           </small>
         </div>
       </div>
     </div>
   </div>
   <br>
   <div class="row no-gutters">
     <div class="card-deck">
-      <a name="samplePsychic"></a>
+     <a name="cellAtlas"></a> 
      <div class="card">
        <div class="card-body text-center">
-          <span class="card-top-img">
-            <div id="carouselInd" class="carousel slide" data-ride="carousel" style="/*background-color: black*/">
-              <div class="carousel-inner">
-                <div class="carousel-item active">
-                  <img style="max-height: 200px"
-                  src="<!--#echo var='ROOT'-->images/SamplePsychicReportCard.png"
-                  alt="Report Card view, showing matches grouped by sample. Has CSV download.">
-                </div>
-                <div class="carousel-item">
-                  <img style="max-height: 200px"
-                  src="<!--#echo var='ROOT'-->images/SamplePsychicDetailedView.png"
-                  alt="By-sample view. Similar to Report Card but easier to navigate.">
-                </div>
-                <div class="carousel-item">
-                  <img style="max-height: 200px"
-                  src="<!--#echo var='ROOT'-->images/SamplePsychicPlot.png"
-                  alt="Experimental tSNE clustering of input samples.">
-                </div>
-              </div>
-              <a class="carousel-control-prev" href="#carouselInd" role="button" data-slide="prev">
-              <i class="fas fa-angle-left fa-2x text-primary" aria-hidden="true"></i>
-              </a>
-              <a class="carousel-control-next" href="#carouselInd" role="button" data-slide="next">
-              <i class="fas fa-angle-right fa-2x text-primary" aria-hidden="true"></i>
-              </a>
-            </div>
-          </span>
-          <p class="lead"><span style="color: #1E90FF">Sample Psychic:</span> See how your
-          cells compare</p>
+         <img class="card-img-top"Style="max-width: 300px"	
+         src="https://cellatlas.ucsc.edu/static/media/logo.3369643f.svg">
+         <p class="lead"><span style="color: #1E90FF">UCSC Cell Atlas</span></p>
          <ul class="list-group list-group-flush text-left">
            <li class="list-group-item">
            <p>
-            Sample Psychic can take your gene expression data and
-            compare it to curated references.
-            This comparison is used to produce a scorecard which shows how closely your data maps
-            up to the curated cell types.</p>
-            <p>
-            The Sample Psychic web application allows
-            users to upload gene expression data and gain insights into those samples by
-            applying suites of pre-trained concept classifiers to each sample. The
-            resulting set of classification scores is presented as a report card that can
-            be used to validate the identity of the samples and explore similarity between
-            these samples and target concepts represented in in the Sample Psychic suite.
-            For CIRM, classifiers were built for both fetal tissue clusters and hand
-            labeled brain regions. One binary classifier is created for tissue
-            type/cluster. A total of 96 fetal tissue clusters are represented in the
-            Sample Psychic classifier compendium along with 30 classifiers representing
-            hand-labeled brain regions. The pattern of individual classifier scores can
-            give a picture of how user samples map to brain regions and to previously
-            analyzed clusters.</p></li>
-            <li class="list-group-item"><a href="https://samplepsychic.ucsc.edu/"
-            target="_blank">Sample Psychic Website</a> <i class="fas fa-external-link-alt"
+           The UCSC Cell Atlas is a growing compendium of single-cell mRNA seq
+           data coupled with visualizations and query abilities designed to expedite the
+           process of biological discovery from single-cell mRNA seq experiments. We aim
+           to augment research by providing an intuitive web interface for browsing single-cell 
+           mRNA seq experiments and a seamless connection from browsing to analysis
+           through a RESTful API. Also under development is a cell type labeling
+           app geared to ease the burden of manual annotation and creation of publication
+           quality figures for newly generated data.</p>
+           </li>
+           <li class="list-group-item"><a href="https://cellatlas.ucsc.edu/"
+           target="_blank">UCSC Cell Atlas Website</a> <i class="fas fa-external-link-alt"
            aria-hidden="true"></i></p></li>
           </ul>
         </div>
         <div class="card-footer">
           <small class="text-muted">
-          Sample Psychic was created by James Durbin.
+          The UCSC Cell Atlas was created by the Josh Stuart Lab at UCSC. 
           </small>
         </div>
       </div>
       <a name="MISCE"></a>
       <div class="card">
         <div class="card-body text-center">
           <img class="card-img-top" style="max-width: 300px"
           src="<!--#echo var='ROOT'-->images/misce1.png">
           <p class="lead"><span style="color: #1E90FF">MISCE:</span> A Minimum Information
           About a Stem Cell Experiment</p>
           <ul class="list-group list-group-flush text-left">
             <li class="list-group-item">
               <p>
               MISCE, or Minimum Information about a Stem Cell Expriment, is a
               spreadsheet that attempts to collect a rich set of useful information (metadata) about