a7652d074beefd4f023287d09ec32bc2bbf43796 hiram Fri Jan 24 10:26:32 2020 -0800 now using common scripts to build hubs refs #24748 diff --git src/hg/makeDb/doc/primateAsmHub/makefile src/hg/makeDb/doc/primateAsmHub/makefile deleted file mode 100644 index 4fc98e8..0000000 --- src/hg/makeDb/doc/primateAsmHub/makefile +++ /dev/null @@ -1,39 +0,0 @@ - -Name="Primates" -name="primates" -destDir=/hive/data/genomes/asmHubs/${name} -srcDir=${HOME}/kent/src/hg/makeDb/doc/primateAsmHub - -all:: makeDirs ${destDir}/hub.txt ${destDir}/groups.txt ${destDir}/genomes.txt \ - ${destDir}/index.html ${destDir}/asmStats${Name}.html - -makeDirs: - mkdir -p ${destDir} - ${srcDir}/mkSymLinks.pl - -${destDir}/index.html: ${srcDir}/mkHubIndex.pl - ${srcDir}/mkHubIndex.pl > $@ - sed -e "s/hgdownload.soe/genome-test.gi/g; s#${name}/hub.txt#${name}/testHub.txt#; s/asmStats${Name}/testAsmStats${Name}/;" $@ > ${destDir}/testIndex.html - chmod +x $@ ${destDir}/testIndex.html - -${destDir}/asmStats${Name}.html: ${srcDir}/mkAsmStats.pl - ${srcDir}/mkAsmStats.pl > $@ - sed -e "s/hgdownload.soe/genome-test.gi/g; s/index.html/testIndex.html/; s/asmStats${Name}/testAsmStats${Name}/;" $@ > ${destDir}/testAsmStats${Name}.html - chmod +x $@ ${destDir}/testAsmStats${Name}.html - -${destDir}/genomes.txt: ${srcDir}/mkGenomes.pl \ - ${srcDir}/primates.asmId.commonName.tsv \ - ${srcDir}/primates.commonName.asmId.orderList.tsv - ${srcDir}/mkGenomes.pl > $@ - -# ${destDir}/genomes.txt: ${destDir}/asmStats${Name}.html ${srcDir}/mkGenomes.pl ${srcDir}/mkSymLinks.sh -# cd ${destDir} && ${srcDir}/mkSymLinks.sh - -${destDir}/hub.txt: ${srcDir}/hub.txt - rm -f ${destDir}/hub.txt - cp -p ${srcDir}/hub.txt ${destDir}/hub.txt - sed -e 's/index.html/testIndex.html/;' ${srcDir}/hub.txt > ${destDir}/testHub.txt - -${destDir}/groups.txt: ${srcDir}/groups.txt - rm -f ${destDir}/groups.txt - cp -p ${srcDir}/groups.txt ${destDir}/groups.txt