9d57b3048d4df5f3164f1a3f56f36a0d1f700e34
hiram
  Thu Jan 23 11:02:36 2020 -0800
need to have asmId.faSize.txt in top level directory for asmHubStats refs #24748

diff --git src/hg/utils/automation/doAssemblyHub.pl src/hg/utils/automation/doAssemblyHub.pl
index fe6735a..8a649b9 100755
--- src/hg/utils/automation/doAssemblyHub.pl
+++ src/hg/utils/automation/doAssemblyHub.pl
@@ -1232,30 +1232,32 @@
   my $wmMasked=`grep "masked total" $buildDir/trackData/windowMasker/faSize.$asmId.cleanWMSdust.txt | awk '{print \$1}' | sed -e 's/%//;'`;
   my $rmMasked=`grep "masked total" $buildDir/trackData/repeatMasker/faSize.rmsk.txt | awk '{print \$1}' | sed -e 's/%//;'`;
 
   my $src2BitToMask = "../repeatMasker/$asmId.rmsk.2bit";
   if ($wmMasked > $rmMasked) {
     $src2BitToMask = "../windowMasker/$asmId.cleanWMSdust.2bit";
   }
 
   $bossScript->add(<<_EOF_
 export asmId=$asmId
 
 if [ ../simpleRepeat/trfMask.bed.gz -nt \$asmId.masked.faSize.txt ]; then
   twoBitMask $src2BitToMask -type=.bed \\
      -add ../simpleRepeat/trfMask.bed.gz \$asmId.masked.2bit
   twoBitToFa \$asmId.masked.2bit stdout | faSize stdin > \$asmId.masked.faSize.txt
+  touch -r \$asmId.masked.2bit \$asmId.masked.faSize.txt
+  cp -p \$asmId.masked.faSize.txt ../../\$asmId.faSize.txt
 else
   printf "# addMask step previously completed\\n" 1>&2
   exit 0
 fi
 _EOF_
   );
 
   $bossScript->execute();
 } # addMask
 
 #########################################################################
 # * step: windowMasker [workhorse]
 sub doWindowMasker {
   my $runDir = "$buildDir/trackData/windowMasker";