831f64579844a0fbd41935fc844160991d44dbb0
hiram
  Thu Jan 23 15:28:33 2020 -0800
now using new minimal makefile with single set of scripts refs #24748

diff --git src/hg/makeDb/doc/vertebratesAsmHub/makefile src/hg/makeDb/doc/vertebratesAsmHub/makefile
index 1ae7051..a92dbbd 100644
--- src/hg/makeDb/doc/vertebratesAsmHub/makefile
+++ src/hg/makeDb/doc/vertebratesAsmHub/makefile
@@ -1,39 +1,8 @@
 
 Name=Vertebrate
 name=vertebrate
-destDir=/hive/data/genomes/asmHubs/${name}
-srcDir=${HOME}/kent/src/hg/makeDb/doc/${name}sAsmHub
 
-all:: makeDirs ${destDir}/hub.txt ${destDir}/groups.txt ${destDir}/genomes.txt \
-	${destDir}/index.html ${destDir}/asmStats${Name}.html
+# Alligator_mississippiensis
+defaultAssembly=GCF_000281125.3_ASM28112v4
 
-makeDirs:
-	mkdir -p ${destDir}
-	${srcDir}/mkSymLinks.pl
-
-${destDir}/index.html: ${srcDir}/mkHubIndex.pl
-	${srcDir}/mkHubIndex.pl > $@
-	sed -e "s/hgdownload.soe/genome-test.gi/g; s#${name}/hub.txt#${name}/testHub.txt#; s/asmStats${Name}/testAsmStats${Name}/;" $@ > ${destDir}/testIndex.html
-	chmod +x $@ ${destDir}/testIndex.html
-
-${destDir}/asmStats${Name}.html: ${srcDir}/mkAsmStats.pl
-	${srcDir}/mkAsmStats.pl > $@
-	sed -e "s/hgdownload.soe/genome-test.gi/g; s/index.html/testIndex.html/; s/asmStats${Name}/testAsmStats${Name}/;" $@ > ${destDir}/testAsmStats${Name}.html
-	chmod +x $@ ${destDir}/testAsmStats${Name}.html
-
-${destDir}/genomes.txt:  ${srcDir}/mkGenomes.pl \
-	${srcDir}/${name}.asmId.commonName.tsv \
-	${srcDir}/${name}.commonName.asmId.orderList.tsv
-	${srcDir}/mkGenomes.pl > $@
-
-# ${destDir}/genomes.txt:  ${destDir}/asmStats${Name}.html ${srcDir}/mkGenomes.pl ${srcDir}/mkSymLinks.sh
-#	cd ${destDir} && ${srcDir}/mkSymLinks.sh
-
-${destDir}/hub.txt: ${srcDir}/hub.txt
-	rm -f ${destDir}/hub.txt
-	cp -p ${srcDir}/hub.txt ${destDir}/hub.txt
-	sed -e 's/index.html/testIndex.html/;' ${srcDir}/hub.txt > ${destDir}/testHub.txt
-
-${destDir}/groups.txt: ${srcDir}/groups.txt
-	rm -f ${destDir}/groups.txt
-	cp -p ${srcDir}/groups.txt ${destDir}/groups.txt
+include ../asmHubs/asmHubs.mk