a1cbac0f4ffff0ec3f9f709e48ef04fcc9769aa3
max
  Fri Jan 24 08:00:44 2020 -0800
adding a do script for clinvar lift track and docs page, refs #24825
(Not sure what to do about makedocs for an automated track like this)

diff --git src/hg/makeDb/trackDb/trackDb.ra src/hg/makeDb/trackDb/trackDb.ra
index 2d1a6cf..4b516a7 100644
--- src/hg/makeDb/trackDb/trackDb.ra
+++ src/hg/makeDb/trackDb/trackDb.ra
@@ -1005,39 +1005,39 @@
 visibility hide
 color 120,70,30
 altColor 0,0,0
 type bed 4 +
 
 shortLabel Rat Synteny
 longLabel Human/Rat Synteny Using Blastz Single Coverage (100,000-base window)
 group compGeno
 visibility hide
 color 0,100,0
 altColor 255,240,200
 type bed 4 .
 
 track clinvarLift
 shortLabel ClinVar Lift
-longLabel Human ClinVar lifted to this genome
+longLabel Human ClinVar variants lifted to $Organism
 group compGeno
 visibility hide
-color 0,0,100
 type bigBed 12 +
-bigDataUrl /gbdb/susScr11/bbi/clinvarLift.bb
+bigDataUrl /gbdb/$D/bbi/clinvarLift.bb
 release alpha
 itemRgb on
-urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+# how should we handle the hgsid here? Isn't the hgsid required for backlinks? Or maybe not here, as it'll open in a new tab?
+urls origPos="/cgi-bin/hgTracks?position=$$" rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
 mouseOverField _mouseOver
 scoreLabel ClinVar Star-Rating (0-4)
 
 track syntenyRat
 shortLabel Rat Synteny
 longLabel $Organism/Rat Synteny Using Blastz Single Coverage (100k window)
 group compGeno
 visibility hide
 color 0,100,0
 altColor 255,240,200
 type bed 4 +
 
 # Affy Exon supertrack
         track affyAllExonSuper
         superTrack on