eff3e5db3801d1f516a3230d6f106bc89a6e0db9
max
  Thu Jan 23 08:03:02 2020 -0800
adding clinvar lift track, right now only for pig, refs #24825

diff --git src/hg/makeDb/trackDb/trackDb.ra src/hg/makeDb/trackDb/trackDb.ra
index 1e8a3f8..2d1a6cf 100644
--- src/hg/makeDb/trackDb/trackDb.ra
+++ src/hg/makeDb/trackDb/trackDb.ra
@@ -1003,30 +1003,44 @@
 longLabel Corresponding Chromosome in Mouse (NCBI)
 group compGeno
 visibility hide
 color 120,70,30
 altColor 0,0,0
 type bed 4 +
 
 shortLabel Rat Synteny
 longLabel Human/Rat Synteny Using Blastz Single Coverage (100,000-base window)
 group compGeno
 visibility hide
 color 0,100,0
 altColor 255,240,200
 type bed 4 .
 
+track clinvarLift
+shortLabel ClinVar Lift
+longLabel Human ClinVar lifted to this genome
+group compGeno
+visibility hide
+color 0,0,100
+type bigBed 12 +
+bigDataUrl /gbdb/susScr11/bbi/clinvarLift.bb
+release alpha
+itemRgb on
+urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"
+mouseOverField _mouseOver
+scoreLabel ClinVar Star-Rating (0-4)
+
 track syntenyRat
 shortLabel Rat Synteny
 longLabel $Organism/Rat Synteny Using Blastz Single Coverage (100k window)
 group compGeno
 visibility hide
 color 0,100,0
 altColor 255,240,200
 type bed 4 +
 
 # Affy Exon supertrack
         track affyAllExonSuper
         superTrack on
         shortLabel Affy Exon
         longLabel Affymetrix All Exon Microarrays
         group regulation