4a08b4785143306d5388ab61c4eed13ee4212cd7 lrnassar Fri Jan 10 15:37:05 2020 -0800 Cleaning up stale pennantIcons, starting the new year Fresh. No rm. diff --git src/hg/makeDb/trackDb/trackDb.transMap.ra src/hg/makeDb/trackDb/trackDb.transMap.ra index 43b35e2..c79dc36 100644 --- src/hg/makeDb/trackDb/trackDb.transMap.ra +++ src/hg/makeDb/trackDb/trackDb.transMap.ra @@ -1,254 +1,253 @@ track transMap superTrack on shortLabel TransMap longLabel TransMap Alignments group genes track transMapV4 superTrack on shortLabel TransMap V4 longLabel TransMap Alignments Version 4 html transMap group genes track transMapEnsemblV4 superTrack transMapV4 pack shortLabel TransMap Ensembl longLabel TransMap Ensembl and GENCODE Mappings Version 4 html transMapEnsembl transMapSrcSet ensembl group genes type bigPsl priority 10.001 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.ensembl.transMapV4.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapEnsemblV4 searchType bigPsl track transMapRefSeqV4 superTrack transMapV4 pack shortLabel TransMap RefGene longLabel TransMap RefSeq Gene Mappings Version 4 html transMapRefSeq transMapSrcSet refseq group genes type bigPsl priority 10.003 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.refseq.transMapV4.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapRefSeqV4 searchType bigPsl track transMapRnaV4 superTrack transMapV4 pack shortLabel TransMap RNA longLabel TransMap GenBank RNA Mappings Version 4 html transMapRna transMapSrcSet rna group genes type bigPsl priority 10.004 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.rna.transMapV4.bigPsl searchIndex name,srcTransId,geneName searchTable transMapRnaV4 searchType bigPsl track transMapEstV4 superTrack transMapV4 hide shortLabel TransMap ESTs longLabel TransMap EST Mappings Version 4 html transMapEst transMapSrcSet est group genes type bigPsl priority 10.005 color 0,100,0 canPack on visibility hide baseColorDefault none baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.est.transMapV4.bigPsl searchIndex name,srcTransId searchTable transMapEstV4 searchType bigPsl track transMapV5 superTrack on shortLabel TransMap V5 longLabel TransMap Alignments Version 5 html transMapV5 group genes -pennantIcon New red ../goldenPath/newsarch.html#071519 "Released Jul. 15, 2019" track transMapEnsemblV5 superTrack transMapV5 pack shortLabel TransMap Ensembl longLabel TransMap Ensembl and GENCODE Mappings Version 5 html transMapEnsembl transMapSrcSet ensembl group genes type bigPsl priority 10.001 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.ensembl.transMapV5.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapEnsemblV5 searchType bigPsl track transMapRefSeqV5 superTrack transMapV5 pack shortLabel TransMap RefGene longLabel TransMap RefSeq Gene Mappings Version 5 html transMapRefSeq transMapSrcSet refseq group genes type bigPsl priority 10.003 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.refseq.transMapV5.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapRefSeqV5 searchType bigPsl track transMapRnaV5 superTrack transMapV5 hide shortLabel TransMap RNA longLabel TransMap GenBank RNA Mappings Version 5 html transMapRna transMapSrcSet rna group genes type bigPsl priority 10.004 color 0,100,0 canPack on visibility hide baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.rna.transMapV5.bigPsl searchIndex name,srcTransId,geneName searchTable transMapRnaV5 searchType bigPsl track transMapEstV5 superTrack transMapV5 hide shortLabel TransMap ESTs longLabel TransMap EST Mappings Version 5 html transMapEst transMapSrcSet est group genes type bigPsl priority 10.005 color 0,100,0 canPack on visibility hide baseColorDefault none baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.est.transMapV5.bigPsl searchIndex name,srcTransId searchTable transMapEstV5 searchType bigPsl