940dbe5d9aa8d7d58f364d2e152324f2ec4ec331 hiram Tue Jan 14 11:38:33 2020 -0800 now running up ncbiRefSeq gene tracks refs #24748 diff --git src/hg/utils/automation/asmHubTrackDb.sh src/hg/utils/automation/asmHubTrackDb.sh index 47234f9..6c83f35 100755 --- src/hg/utils/automation/asmHubTrackDb.sh +++ src/hg/utils/automation/asmHubTrackDb.sh @@ -475,30 +475,31 @@ skipEmptyFields on urls GeneID=\"https://www.ncbi.nlm.nih.gov/gene/\$\$\" MIM=\"https://www.ncbi.nlm.nih.gov/omim/\$\$\" HGNC=\"http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=\$\$\" FlyBase=\"http://flybase.org/reports/\$\$\" WormBase=\"http://www.wormbase.org/db/gene/gene?name=\$\$\" RGD=\"https://rgd.mcw.edu/rgdweb/search/search.html?term=\$\$\" SGD=\"https://www.yeastgenome.org/locus/\$\$\" miRBase=\"http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=\$\$\" ZFIN=\"https://zfin.org/\$\$\" MGI=\"http://www.informatics.jax.org/marker/\$\$\"\n\n" "${asmId}" "${asmId}" fi if [ -s ${buildDir}/trackData/ncbiRefSeq/$asmId.bigPsl.bb ]; then rm -f $buildDir/bbi/${asmId}.bigPsl.bb ln -s ../trackData/ncbiRefSeq/$asmId.bigPsl.bb $buildDir/bbi/${asmId}.bigPsl.bb printf " track ncbiRefSeqPsl priority 5 parent refSeqComposite off shortLabel RefSeq Alignments longLabel RefSeq Alignments of RNAs type bigPsl + searchIndex name bigDataUrl bbi/%s.bigPsl.bb indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsMaxZoom 10000.0 showCdsAllScales . baseColorDefault diffCodons pslSequence no baseColorUseSequence lfExtra baseColorUseCds table given color 0,0,0\n\n" "${asmId}" fi $scriptDir/asmHubNcbiRefSeq.pl $asmId $buildDir/html/$asmId.names.tab $buildDir/trackData > $buildDir/html/$asmId.refSeqComposite.html