e1c6433a93dc02faf83c9008f7562c0ec7415bec lrnassar Mon Jan 13 12:48:58 2020 -0800 Making API link directly to help page instead of redirect refs #24763 diff --git src/hg/makeDb/trackDb/human/avada.html src/hg/makeDb/trackDb/human/avada.html index 02e08ee..71cd293 100644 --- src/hg/makeDb/trackDb/human/avada.html +++ src/hg/makeDb/trackDb/human/avada.html @@ -37,31 +37,31 @@ <p> For automated download and analysis, the genome annotation is stored in a bigBed file that can be downloaded from <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/bbi/" target="_blank">our download server</a>. The file for this track is called <tt>avada.bb</tt>. Individual regions or the whole genome annotation can be obtained using our tool <tt>bigBedToBed</tt> which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, e.g. <tt>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/avada.bb -chrom=chr21 -start=0 -end=100000000 stdout</tt></p> </p> <p> For automated access, this track like all others, is also available via our -<a href="../cgi-bin/hubApi">API</a>. However, for bulk processing in +<a href="../goldenPath/help/api.html">API</a>. However, for bulk processing in pipelines, downloading the data and/or using bigBed files as described above is usually faster. </p> <h2>Methods</h2> <p> The AVADA VCF file was reformatted at UCSC to the <a href="../goldenPath/help/bigBed.html">bigBed</a> format. The program that performs the conversion is available on <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/makeDb/avada" target="_blank">Github</a>. The paper reference information was added from MEDLINE and is used Courtesy of the U.S. National Library of Medicine, according to its <a href="https://www.nlm.nih.gov/databases/download/terms_and_conditions_pubmed.html" target=_blank> Terms and Conditions</a>.</p> <h2>Credits</h2>