5b769efe967d20b676d60303b2883e4f365e16d9 markd Thu Jan 16 13:53:32 2020 -0800 import of GENCODE V33 diff --git src/hg/makeDb/doc/hg38/gencode.txt src/hg/makeDb/doc/hg38/gencode.txt index 953cbfa..a009a86 100644 --- src/hg/makeDb/doc/hg38/gencode.txt +++ src/hg/makeDb/doc/hg38/gencode.txt @@ -601,30 +601,32 @@ # edit hg/makeDb/outside/gencode/gencodeLoad.mk to set release and ensembl versions # download, build and load tables mkdir -p /hive/data/genomes/hg38/bed/gencodeV33 pushd /hive/data/genomes/hg38/bed/gencodeV33 (time nice make -j 10 -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk) >&build.1.out& # compare tables from previous release to see if number changed makes # sense. Results are in gencode-cmp.tsv # generate trackDb and joiner blurb pushd ~/kent/src/hg/makeDb/trackDb ../../makeDb/outside/gencode/gencodeGenerateTrackDbs hg38 33 99 'Jan 2020' - # If being pushed public, update 'Release Notes' in + # Update 'Release Notes' in # human/hg38/wgEncodeGencodeSuper.html # edit human/hg38/trackDb.gencode.ra to add new .ra file include make DBS=hg38 ## only if being pushed to RR (may be there from pre-release) # edit all.joiner to add ~/tmp/gencodeV33.joiner # verify with: pushd /hive/data/genomes/hg38/bed/gencodeV33 make -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck + # check tracks in browser sand box # commit all + make DBS=hg38 alpha #########################################################################