516ff15a73f51f29466f148d163ec3d83d9e41fb markd Thu Jan 16 13:45:55 2020 -0800 import of GENCODE V33 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index c77913b..da5ac58 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -23,35 +23,35 @@ SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## -#db = hg38 -db = hg19 +db = hg38 +#db = hg19 #db = mm10 -#preRelease = no -preRelease = yes +preRelease = no +#preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M24 prevVer = M23 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 99_38 ensemblPrevVer = 98_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 33 prevVer = 32 gencodeOrg = Gencode_human