75c0e5568aaddeb999f1ff3e0ad43815025979f9 markd Thu Jan 16 15:01:34 2020 -0800 import of GENCODE VM24 diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index da5ac58..b3326cb 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -25,31 +25,31 @@ ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE # # - ensemblPrevVersion is use to get chrom name mappings for pre-release, # as this doesn't change between release. ## db = hg38 #db = hg19 -#db = mm10 +db = mm10 preRelease = no #preRelease = yes ifeq (${db},mm10) grcRefAssembly = GRCm38 ver = M24 prevVer = M23 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 99_38 ensemblPrevVer = 98_38 ensemblCDnaDb = mus_musculus_cdna_${ensemblPrevVer} else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 33