8ab524629a1d9ac18205cfc15696a8372a43f931 max Thu Jan 16 03:23:14 2020 -0800 adding knownAttrs to hgMirror always-download table list. refs #24741 diff --git src/hg/hgMirror/hgMirror src/hg/hgMirror/hgMirror index 96e20bc..c0f347b 100755 --- src/hg/hgMirror/hgMirror +++ src/hg/hgMirror/hgMirror @@ -89,31 +89,31 @@ # list of tables to exclude from track search REMOVESEARCH = ["wgEncodeGencodeBasicV19", "wgEncodeGencodeCompV17", "wgEncodeGencodeBasicV14", "wgEncodeGencodeBasicV17", "wgEncodeGencodeCompV14", "mgcFullMrna", "wgEncodeGencodeBasicV7", "orfeomeMrna", "wgEncodeGencodePseudoGeneV14", "wgEncodeGencodePseudoGeneV17", "wgEncodeGencodePseudoGeneV19", "wgEncodeGencodeCompV7", "knownGeneOld6", "geneReviews", "transMapAlnSplicedEst", "gbCdnaInfo", "oreganno", "vegaPseudoGene", "transMapAlnMRna", "ucscGenePfam", "qPcrPrimers", "transMapAlnUcscGenes", "transMapAlnRefSeq", "genscan", "bacEndPairs", "fosEndPairs"] # list of tracks to hide by default FORCEHIDE = ["intronEst", "cons100way", "cons46way", "ucscRetroAli5", "mrna", "wgEncodeRegDnaseClustered"] # always copy these (small) tables for the current db, if they exist FORCETABLES = ['cytoBand', 'chromInfo', 'cytoBandIdeo', 'kgColor', \ 'knownGene', 'kgXref', 'ensemblLift', 'ucscToEnsembl','wgEncodeRegTfbsCells', \ 'tableList', 'refSeqStatus', 'wgEncodeRegTfbsCellsV3', 'extFile', 'trackDb', 'grp', 'ucscRetroInfo5', "refLink", "ucscRetroSeq5", "ensemblLift", "knownCanonical", 'gbExtFile', 'flyBase2004Xref', # for gencode/knownGene tracks and hg38 in particular - "knownToTag", "ncbiRefSeqLink", "ncbiRefSeqCurated", "gtexGeneModel", "gtexGene", + "knownToTag", "ncbiRefSeqLink", "ncbiRefSeqCurated", "gtexGeneModel", "gtexGene", "knownAttrs", # for faster searches 'hgFindSpec', 'ensemblToGeneName', "ucscToINSDC", # these are almost required for searches, common tracks and not too big "ensGene", "xenoRefGene" ] # always copy these hgFixed tables FORCEFIXED = ['trackVersion'] #FORCEFIXED = ['trackVersion', 'tableList'] # big file table base URL # points to a http directory with <db>/bigFiles.tab files that tell us which bigfile goes to which track #BIGFILETABLEURL = "http://hgwdev.soe.ucsc.edu/~max/browserbox/%s/bigFiles.tab.gz" # %s == db BIGFILETABLEURL = "http://hgdownload.soe.ucsc.edu/goldenpath/%s/database/bigFiles.txt.gz"