aa048e375b37cade56f3f3f2c3a35fc16fb357a0
max
  Fri Jan 17 05:38:23 2020 -0800
adding NCBI Refseq Select track, refs #24787

diff --git src/hg/makeDb/doc/hg38/ncbiRefSeq.txt src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
index d672c48..b0d3029 100644
--- src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
+++ src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
@@ -300,15 +300,23 @@
  # ncbiRefSeq 4.418%, refGene 3.098%, both 3.073%, cover 69.56%, enrich 22.45x
  # previous:
  # ncbiRefSeq 4.332%, refGene 3.098%, both 2.920%, cover 67.40%, enrich 21.75x
 
     featureBits -enrichment hg38 ncbiRefSeqCurated refGene
  # ncbiRefSeqCurated 3.073%, refGene 3.098%, both 3.067%, cover 99.81%, enrich 32.22x
  # previous:
  # ncbiRefSeqCurated 2.880%, refGene 3.098%, both 2.846%, cover 98.84%, enrich 31.90x
 
     featureBits -enrichment hg38 refGene ncbiRefSeqCurated
  # refGene 3.098%, ncbiRefSeqCurated 3.073%, both 3.067%, cover 98.99%, enrich 32.22x
  # previous:
  # refGene 3.098%, ncbiRefSeqCurated 2.880%, both 2.846%, cover 91.86%, enrich 31.90x
 
 #########################################################################
+# addition of RefSeq Select-restricted subset, Max, Feb 10 2019
+cd /hive/data/genomes/hg38/bed/ncbiRefSeq.p13.2019-12-06/
+zcat download/*_genomic.gff.gz | grep 'tag=RefSeq Select'  | cut -f9- | tr ';' '\n' | grep Name= | grep -v NP_ | cut -d= -f2 | sort -u > refseqSelectTranscripts.txt
+zcat process/hg38.curated.gp | fgrep -f refseqSelectTranscripts.txt - > refseqSelect.curated.gp
+hgLoadGenePred -genePredExt hg38 ncbiRefSeqSelect refseqSelect.curated.gp
+wc -l refseqSelect.curated.gp
+6378 refseqSelect.curated.gp
+#############################################################################