681f801323eb26cf73befd7f4cbb44f3f528e6ca max Mon Jan 20 06:47:05 2020 -0800 changing refseq select description based on terence email, refs #24780 diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html index e2a9d2c..e6350fa 100644 --- src/hg/makeDb/trackDb/refSeqComposite.html +++ src/hg/makeDb/trackDb/refSeqComposite.html @@ -43,34 +43,34 @@ do not fit the requirements for inclusion in the <em>RefSeq Curated</em> or the <em>RefSeq Predicted</em> tracks.</li> <li> <em>RefSeq Alignments</em> – alignments of RefSeq RNAs to the $organism genome provided by the RefSeq group.</li> <li> <em>RefSeq Diffs</em> – alignment differences between the $organism reference genome(s) and RefSeq transcripts. <small>(Track not currently available for every assembly.)</small> </li> <li> <em>RefSeq HGMD</em> – only show RefSeq Curated transcripts mentioned in the Human Gene Mutation Database. This track is only available on the human genomes hg19 and hg38. </li> <li> <em>RefSeq Select</em> – only show transcript marked as <a href="https://www.ncbi.nlm.nih.gov/refseq/refseq_select/" target=_blank>RefSeq Select</a> or <a href="https://www.ncbi.nlm.nih.gov/refseq/MANE/" target=_blank>MANE</a>. - For the large majority of genes, these show only one transcript per protein coding gene. A few hundred genes - have more than one selected transcript. This track is only available on the human genomes hg19 and hg38. - Every gene can a RefSeq Select or MANE transcript, but not both at the same time. - </li> + A single Select transcript is chosen as representative for each + protein-coding gene. Transcripts categorized as MANE are further agreed upon + as representative by both NCBI RefSeq and Ensembl/GENCODE, and have a 100% + identical match to a transcript in the Ensembl annotation. </li> </ul> </dl> <dl> <dt><em><strong>UCSC annotations</strong></em></dt> <ul> <li> <em>UCSC RefSeq</em> – annotations generated from UCSC's realignment of RNAs with NM and NR accessions to the $organism genome. This track was previously known as the "RefSeq Genes" track.</li> </ul> </dl> <p> The <em>RefSeq All</em>, <em>RefSeq Curated</em>, <em>RefSeq Predicted</em>, <em>RefSeq Clinical</em>