8ada62f0cad845d55480e7e47dcab4b246736383 max Fri Jan 17 09:44:58 2020 -0800 after feedback from Terence, fix RefSeq Select to include MANE and update the docs page. refs #24787 diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html index 31ecd83..1aa8507 100644 --- src/hg/makeDb/trackDb/refSeqComposite.html +++ src/hg/makeDb/trackDb/refSeqComposite.html @@ -41,33 +41,34 @@ <li> <em>RefSeq Other</em> – all other annotations produced by the RefSeq group that do not fit the requirements for inclusion in the <em>RefSeq Curated</em> or the <em>RefSeq Predicted</em> tracks.</li> <li> <em>RefSeq Alignments</em> – alignments of RefSeq RNAs to the $organism genome provided by the RefSeq group.</li> <li> <em>RefSeq Diffs</em> – alignment differences between the $organism reference genome(s) and RefSeq transcripts. <small>(Track not currently available for every assembly.)</small> </li> <li> <em>RefSeq HGMD</em> – only show RefSeq Curated transcripts mentioned in the Human Gene Mutation Database. This track is only available on the human genomes hg19 and hg38. </li> - <em>RefSeq Select</em> – only show <a href="" target=_blank>RefSeq Select</a> transcripts, - usually there is one per protein coding gene, only 500-600 genes have more than one - selected transcript. This track is only available on the human genomes hg19 and hg38. + <em>RefSeq Select</em> – only show transcript marked as <a href="https://www.ncbi.nlm.nih.gov/refseq/refseq_select/" target=_blank>RefSeq Select</a> or <a href="https://www.ncbi.nlm.nih.gov/refseq/MANE/" target=_blank>MANE</a>. + For the large majority of genes, these show only one transcript per protein coding gene. A few hundred genes + have more than one selected transcript. This track is only available on the human genomes hg19 and hg38. + Every gene can a RefSeq Select or MANE transcript, but not both at the same time. </li> </ul> </dl> <dl> <dt><em><strong>UCSC annotations</strong></em></dt> <ul> <li> <em>UCSC RefSeq</em> – annotations generated from UCSC's realignment of RNAs with NM and NR accessions to the $organism genome. This track was previously known as the "RefSeq Genes" track.</li> </ul> </dl> <p>